Factsheet for Os05t0578900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G448200.1	Wheat	plastid	46.59	59.91
TraesCS1A01G418200.1	Wheat	plastid	46.95	59.82
TraesCS1D01G425900.1	Wheat	plastid	46.24	58.9
HORVU1Hr1G091450.3	Barley	plastid	44.8	57.6
Zm00001d009668_P001	Maize	mitochondrion, nucleus	48.75	50.37
EES20002	Sorghum	plastid	53.05	50.0
Zm00001d039113_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.03	47.18
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	32.97	38.02
Os05t0567900-00	Rice	cytosol, extracellular, plastid	32.26	36.0
Os01t0976800-01	Rice	nucleus	12.19	23.94
Os01t0343300-01	Rice	nucleus	11.11	23.66
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	12.54	18.13
Os02t0220400-01	Rice	nucleus	19.35	15.3
Os06t0571800-02	Rice	nucleus	15.77	12.68

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:4339709	ProteinID:AAD39588.1	ProteinID:AAT39160.1	ProteinID:AAU10691.1
EMBL:AK073464	EMBL:AK101287	ProteinID:BAF18329.1	ProteinID:BAS95501.1	EMBL:DQ784546	ProteinID:EEE64807.1
GO:GO:0000003	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006366	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	GO:GO:0048437	GO:GO:0048510	InterPro:IPR000679	InterPro:IPR013088
EnsemblPlantsGene:Os05g0578900	EnsemblPlants:Os05t0578900-01	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF292	UniProt:Q6L5E5	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0000378046	RefSeq:XP_015638999.1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

NECK LEAF 1GAGA-type zinc finger transcription factor, Organogenesis (Os05t0578900-01)

Coordinates

chr5:+:28817605..28818839

Molecular Weight (calculated)

28293.4 Da

IEP (calculated)

7.195

GRAVY (calculated)

-0.283

Length

279 amino acids

Sequence
(BLAST)

001: MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPPSTVEES AAYDDHSTVT TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAAAAPAANH
101: GAPVPAHYPS LSAATVSWDA TAESYYCGQQ GRPATGAAKC AAGAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG IRYKKEERRA AATTTTADGA
201: AGCGFITAQR GRGSTAAKAA PAVTTCGEET SPYVVGGGGG GGEVADAAYL AWRLNVVPPA ATATAFSVWP ERASLYHYN

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.