Factsheet for Zm00001d009668_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20002	Sorghum	plastid	64.81	59.12
Zm00001d039113_P001	Maize	cytosol, mitochondrion, nucleus, plastid	59.63	56.69
Os05t0578900-01	Rice	nucleus	50.37	48.75
TraesCS1A01G418200.1	Wheat	plastid	38.52	47.49
TraesCS1B01G448200.1	Wheat	plastid	38.15	47.47
TraesCS1D01G425900.1	Wheat	plastid	38.15	47.03
HORVU1Hr1G091450.3	Barley	plastid	36.3	45.16
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	28.89	38.42
Zm00001d043969_P001	Maize	endoplasmic reticulum	31.48	36.48
Zm00001d037605_P001	Maize	nucleus	12.22	23.08
Zm00001d009193_P001	Maize	plastid	11.48	22.3
Zm00001d040775_P001	Maize	nucleus	11.85	21.77
Zm00001d034751_P001	Maize	nucleus	12.96	21.47
Zm00001d011771_P001	Maize	nucleus	13.7	18.97
Zm00001d016361_P001	Maize	nucleus	14.81	10.81
Zm00001d046354_P001	Maize	nucleus	13.7	10.0

Protein Annotations

EntrezGene:103635377	MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A1D6FL14	ProteinID:AQK92388.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF292	SMART:SM00401	SUPFAM:SSF57716	TMHMM:TMhelix	UniParc:UPI0004DE95C5
EnsemblPlantsGene:Zm00001d009668	EnsemblPlants:Zm00001d009668_P001	EnsemblPlants:Zm00001d009668_T001	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

C2C2-GATA-transcription factor 26GATA transcription factor 19

Coordinates

chr8:-:75139891..75141593

Molecular Weight (calculated)

28140.8 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.339

Length

270 amino acids

Sequence
(BLAST)

001: MLRHCTHKQH RHSHQQSVVA AAAAPATMAA ASPAFSLFFP LPNTKAFQFD DDSHSSVTTC PSSPSSSSSS TGTVDCTLSL GTPSSRRAAA KPRPPCLALP
101: SRSAVSCDVA APADQSCCCR CCSCPGGRRP SPAAANKRAA AAHGHGQDPA PLVDHRCASC GTTSTPLWRN GPRGPKSLCN ACGIRFRKKE RRAATGTTTA
201: DMDQGGCYLA QRAQYGAATS GRAYYGGGDG DIADAEAVPA QFLAWRPSVV EAAEFAAVWP EPATLFQYIN

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.