Factsheet for TraesCS1D01G425900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G418200.1	Wheat	plastid	94.98	94.98
TraesCS1B01G448200.1	Wheat	plastid	90.87	91.71
HORVU1Hr1G091450.3	Barley	plastid	88.58	89.4
Os05t0578900-01	Rice	nucleus	58.9	46.24
EES20002	Sorghum	plastid	52.51	38.85
Zm00001d039113_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.23	38.73
Zm00001d009668_P001	Maize	mitochondrion, nucleus	47.03	38.15
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	35.62	33.91
TraesCS1D01G106100.1	Wheat	cytosol	14.16	21.23
TraesCS5D01G508800.1	Wheat	nucleus	13.7	18.52
TraesCS3D01G544000.1	Wheat	nucleus	14.61	17.88
TraesCS6D01G173000.1	Wheat	cytosol	19.18	12.28
TraesCS7D01G359900.1	Wheat	nucleus	18.72	11.42

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0043565
GO:GO:0048437	GO:GO:0048510	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF292	SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:TraesCS1D01G425900
EnsemblPlants:TraesCS1D01G425900.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	TIGR:cd00202	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:479358770..479359858

Molecular Weight (calculated)

23319.0 Da

IEP (calculated)

8.052

GRAVY (calculated)

-0.539

Length

219 amino acids

Sequence
(BLAST)

001: MATSTFSLFF PPLPSSKGQW PVAEETAYSY DDHSTVTTLS PSSPASSASS GYLVDCTLSL GTPSTRQPEL DRTKHGAPPQ AYPSVSAGAE PCYYHQQQGR
101: GGAAGHDQLL DRRCANCGTA STPLWRNGPR GPKSLCNACG IRFKKEERRA AETNAGGGCG YVAQRAHVSA PRAVPYAEEA LPYAGAVDGP FLAWRLNGVP
201: PAPAFSAWPD RQHGVYQYN

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.