CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDX89437
CDY03368
CDY18962
CDY27400
CDY36901
CDY37020
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	CDX74700	AT2G44950.1	21798944
AT2G17670.1	CDY18962	AT2G44950.1	21798944
AT2G17670.1	CDY27400	AT2G44950.1	21798944
AT2G17670.1	CDY37020	AT2G44950.1	21798944
AT2G17670.1	CDY36901	AT3G48150.1	21798944
AT2G17670.1	CDY44976	AT3G48150.1	21798944
AT2G17670.1	CDY58069	AT3G48150.1	21798944
AT2G17670.1	CDY58070	AT3G48150.1	21798944
AT2G17670.1	CDY70805	AT3G48150.1	21798944
AT2G17670.1	CDX89437	AT4G25200.1	21798944
AT2G17670.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30354	Canola	plastid	94.29	94.08
AT2G17670.1	Thale cress	plastid	75.6	74.3
VIT_00s1360g00010.t01	Wine grape	cytosol	29.45	69.79
KRH48741	Soybean	cytosol	43.96	63.29
KRH66617	Soybean	plastid	53.85	57.92
Solyc02g082970.1.1	Tomato	plastid	55.16	53.52
PGSC0003DMT400090670	Potato	plastid	54.73	53.32
VIT_00s0918g00010.t01	Wine grape	plastid	28.79	50.19
GSMUA_Achr1P18100_001	Banana	plastid	44.18	45.27
Os02t0119700-01	Rice	mitochondrion	32.09	39.78
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	31.87	38.16
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	31.43	37.53
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	31.43	37.53
Zm00001d054009_P001	Maize	mitochondrion	30.77	37.23
HORVU6Hr1G013000.2	Barley	plastid	31.43	36.2
OQU84226	Sorghum	cytosol, plastid	31.43	31.5

Protein Annotations

EnsemblPlants:CDY26819	EnsemblPlantsGene:GSBRNA2T00035768001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY26819	ProteinID:CDY26819.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EDB197	UniProt:A0A078GNJ5	MapMan:35.1	:	:	:

Description

BnaC09g09460DBnaC09g09460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNJ5]

Coordinates

chrLK032194:+:431881..434409

Molecular Weight (calculated)

50256.2 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.337

Length

455 amino acids

Sequence
(BLAST)

001: MGKIPSSFRS LTSTQLIKKP TASPPPRNSQ NRITGTHDSP KPPQTTPSRN PFKSPNLSSA KSLFNSIAAT SKIPLDTKFH NSVLQSYASI ATVDDAVKLF
101: HHILKSQPSF SPEPSTFNIL LSHACRSPDS PLSNVHRVLN LMVNSGVEPN NVTTDIAARS LCESDRISDA KDLVMELSEK HSPPDMFTYN YLLKQLCKYE
201: SLNAVYEFRD KMKKSFNVKP DLVSYTILID HVCNSKNLRE AMKLVSDLGA DGFKPDCFVY NTIMKGFCTL SKGSEAVGVF KKMKEDGVEP DRITYNTLIF
301: GLSKSGRVEE ARKYLQTMDE AGYEPDAVAY TALMNGMCRK GASLGALSLL EEMEAKGCAP NDVTYNTLLY GLCKGRLMDK GIEFYEMMKS KGLKLESYAY
401: ATLVRALVRS GKVAEAYEVF DYAVGSKSLS DASAYATLET SLKWVKKAKE QGLAD

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.