Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26819 | Canola | plastid | 74.3 | 75.6 |
| Bra037262.1-P | Field mustard | plastid | 75.16 | 75.49 |
| CDY30354 | Canola | plastid | 74.3 | 75.44 |
| VIT_00s1360g00010.t01 | Wine grape | cytosol | 28.94 | 69.79 |
| KRH48741 | Soybean | cytosol | 45.57 | 66.77 |
| KRH66617 | Soybean | plastid | 54.43 | 59.57 |
| Solyc02g082970.1.1 | Tomato | plastid | 56.37 | 55.65 |
| PGSC0003DMT400090670 | Potato | plastid | 55.94 | 55.46 |
| VIT_00s0918g00010.t01 | Wine grape | plastid | 27.86 | 49.43 |
| GSMUA_Achr1P18100_001 | Banana | plastid | 45.79 | 47.75 |
| Os02t0119700-01 | Rice | mitochondrion | 30.24 | 38.15 |
| TraesCS6B01G097600.1 | Wheat | cytosol, mitochondrion, plastid | 30.02 | 36.58 |
| TraesCS6A01G072600.1 | Wheat | cytosol, mitochondrion, plastid | 29.81 | 36.22 |
| TraesCS6D01G070600.1 | Wheat | cytosol, mitochondrion, plastid | 29.81 | 36.22 |
| Zm00001d054009_P001 | Maize | mitochondrion | 28.73 | 35.37 |
| HORVU6Hr1G013000.2 | Barley | plastid | 29.16 | 34.18 |
| OQU84226 | Sorghum | cytosol, plastid | 30.45 | 31.06 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:816274 | ProteinID:AEC06663.1 | ProteinID:AEC06664.1 | ArrayExpress:AT2G17670 |
| EnsemblPlantsGene:AT2G17670 | RefSeq:AT2G17670 | TAIR:AT2G17670 | RefSeq:AT2G17670-TAIR-G | EnsemblPlants:AT2G17670.1 | TAIR:AT2G17670.1 |
| EMBL:AY085478 | Unigene:At.27997 | EMBL:BT004095 | EMBL:BT005703 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 |
| InterPro:IPR011990 | RefSeq:NP_565422.1 | RefSeq:NP_973481.1 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF17177 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF893 |
| InterPro:Pentatricopeptide_repeat | UniProt:Q84J71 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000000C27A | SEG:seg |
Description
Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
Coordinates
chr2:+:7674319..7676276
Molecular Weight (calculated)
51410.9 Da
IEP (calculated)
8.320
GRAVY (calculated)
-0.316
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.