Factsheet for VIT_00s0918g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_15s0021g02140.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT2G17670.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT2G17670.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT2G17670.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082970.1.1	Tomato	plastid	56.7	31.56
PGSC0003DMT400090670	Potato	plastid	55.94	31.26
Bra037262.1-P	Field mustard	plastid	51.34	29.07
CDY30354	Canola	plastid	50.57	28.95
CDY26819	Canola	plastid	50.19	28.79
AT2G17670.1	Thale cress	plastid	49.43	27.86
KRH66617	Soybean	plastid	43.3	26.71
GSMUA_Achr1P18100_001	Banana	plastid	34.87	20.5
KRH48741	Soybean	cytosol	24.14	19.94
OQU84226	Sorghum	cytosol, plastid	15.33	8.81
Zm00001d054009_P001	Maize	mitochondrion	12.26	8.51
Os02t0119700-01	Rice	mitochondrion	11.88	8.45
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	10.73	7.35
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	10.34	7.09
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	9.96	6.84
HORVU6Hr1G013000.2	Barley	plastid	10.34	6.84
VIT_00s1360g00010.t01	Wine grape	cytosol	1.92	2.6

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100242847	wikigene:100242847	MapMan:35.1	EMBL:AM453163	ProteinID:CAN69960
ProteinID:CAN69960.1	ProteinID:CCB50218	ProteinID:CCB50218.1	UniProt:F6HDC3	EMBL:FN595614	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100242847	wikigene:LOC100242847	PFAM:PF13041	PANTHER:PTHR24015
PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002107F11	ArrayExpress:VIT_00s0918g00010	EnsemblPlantsGene:VIT_00s0918g00010
EnsemblPlants:VIT_00s0918g00010.t01	RefSeq:XP_002267809	RefSeq:XP_002267809.2	RefSeq:XP_019074211.1	:	:

Description

No Description!

Coordinates

chrUn:+:36828282..36829067

Molecular Weight (calculated)

29198.0 Da

IEP (calculated)

9.920

GRAVY (calculated)

-0.387

Length

261 amino acids

Sequence
(BLAST)

001: MGKIPPSFRT STVPVTTLLK NPPAVLPKQS TVLETPQKPH HFPKKRPQPS GKTKKTRTPI EDPKSPVIFN SPNLLDAKKL FASITTTSTT PLDFRFHNAL
101: LQSYSSISTV NDSISFLRHM IKSQPSFSPE RSTYHILLSQ SCKSPNSDLS AVHQTLNLMV THGFPPDRVT TDIAVRSLCS AGREEHAIEL VKELSLKHSP
201: PDSFTYNFII RHLCKTRALS TVYNFIDELQ NSFQLKPDLV TYTILIDNVC NGKESPEATR C

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.