Factsheet for Bra037262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004879.1-P
Bra013872.1-P
Bra018081.1-P
Bra033769.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	Bra004879.1-P	AT2G44950.1	21798944
AT2G17670.1	Bra040332.1-P	AT2G44950.1	21798944
AT2G17670.1	Bra018081.1-P	AT3G48150.1	21798944
AT2G17670.1	Bra033769.1-P	AT3G48150.1	21798944
AT2G17670.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30354	Canola	plastid	96.75	97.81
AT2G17670.1	Thale cress	plastid	75.49	75.16
VIT_00s1360g00010.t01	Wine grape	cytosol	29.07	69.79
KRH48741	Soybean	cytosol	43.38	63.29
KRH66617	Soybean	plastid	52.93	57.68
Solyc02g082970.1.1	Tomato	plastid	54.01	53.09
PGSC0003DMT400090670	Potato	plastid	53.58	52.89
VIT_00s0918g00010.t01	Wine grape	plastid	29.07	51.34
GSMUA_Achr1P18100_001	Banana	plastid	43.38	45.05
Os02t0119700-01	Rice	mitochondrion	31.67	39.78
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	30.8	37.37
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	30.59	37.01
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	30.59	37.01
Zm00001d054009_P001	Maize	mitochondrion	29.72	36.44
HORVU6Hr1G013000.2	Barley	plastid	30.37	35.44
OQU84226	Sorghum	cytosol, plastid	30.8	31.28

Protein Annotations

EnsemblPlants:Bra037262.1	EnsemblPlants:Bra037262.1-P	EnsemblPlantsGene:Bra037262	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002541E05	UniProt:M4F851	MapMan:35.1	:

Description

AT2G17670 (E=2e-192) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:4669376..4670761

Molecular Weight (calculated)

50854.9 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.349

Length

461 amino acids

Sequence
(BLAST)

001: MGKIPSSFRS LTSTQLIKKP TAPPPSPPPP RNSQNRITGT HHDSPKPPQT TTPSRNPFKS PNLSSAKSLF NSIAATSKTP LDTKFHNSVL QSYASIASVD
101: DAVNLFHHIL KSQPNFSPEP STFNILLSHA CRSPDSPLSN VHRVLNLMVN SGVAPNNVTT DIAARSLCES DRISDATDLV MELSEKHSPP DMFTYNYLLK
201: QLCKYESLNA VYEFRDKMKK SFNVKPDLVS YTILIDHVCN SKNLREAMKL VSDLGVDGFK PDCFVYNTIM KGFCTLSKGS EAVGVFKKMK EDGVEPDRIT
301: YNTLIFGLSK SGRVEEARKY LQTMDEAGYE PDAVAYTALM NGMCRKGASL GALSLLEEME ARGCAPNDVT YNTLLYGLCK GRLMEKGIEF YEMMKSKGLK
401: LESYAYATLV RALVRSGKVA EAYEVFDYAV GSKSLSDASA YATLETSLKW VKKAKEQGLA D

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.