CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23958
KRH24006
KRH27971
KRH29310
KRH30315
KRH39841
KRH75261
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	KRH30315	AT2G44950.1	21798944
AT2G17670.1	KRH75261	AT2G44950.1	21798944
AT2G17670.1	KRH24006	AT3G48150.1	21798944
AT2G17670.1	KRH27971	AT3G48150.1	21798944
AT2G17670.1	KRH29310	AT3G48150.1	21798944
AT2G17670.1	KRH77487	AT3G48150.1	21798944
AT2G17670.1	KRH23958	AT4G25200.1	21798944
AT2G17670.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48741	Soybean	cytosol	65.01	87.03
VIT_00s1360g00010.t01	Wine grape	cytosol	34.28	75.52
KRH48742	Soybean	cytosol, mitochondrion, plastid	20.57	63.5
AT2G17670.1	Thale cress	plastid	59.57	54.43
PGSC0003DMT400090670	Potato	plastid	60.05	54.39
Solyc02g082970.1.1	Tomato	plastid	60.28	54.37
CDY26819	Canola	plastid	57.92	53.85
CDY30354	Canola	plastid	57.92	53.73
Bra037262.1-P	Field mustard	plastid	57.68	52.93
GSMUA_Achr1P18100_001	Banana	plastid	52.01	49.55
VIT_00s0918g00010.t01	Wine grape	plastid	26.71	43.3
Os02t0119700-01	Rice	mitochondrion	34.28	39.51
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	33.81	37.63
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	33.81	37.53
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	33.81	37.53
HORVU6Hr1G013000.2	Barley	plastid	33.81	36.2
Zm00001d054009_P001	Maize	mitochondrion	32.15	36.17
OQU84226	Sorghum	cytosol, plastid	33.81	31.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02001997	EnsemblPlantsGene:GLYMA_03G117900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K7KEI0	EnsemblPlants:KRH66617	ProteinID:KRH66617	ProteinID:KRH66617.1	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002956180	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:32808540..32809888

Molecular Weight (calculated)

46939.5 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.276

Length

423 amino acids

Sequence
(BLAST)

001: MGKIPPSFRS AIANPNSSLF RPQPPHFPNK QQQPRKPKPS KQQQNPSSSS LPLFKSPNLQ DAKKLFNSDP RFPNSLLHSY AKLAQTPSDS VNFFNHITKT
101: LSSFSPDRST FHILLSHSSN SLSPIHQTLN LMLAAGITPD TTTADVAVRS LCSAARLDLA VELIKEFASK HCPPDTYTFN FLVKHLCKSR TTILIDNVCN
201: GKNLNLREAM RLVSVLHEEG FKPDCFVYNT IMKGYCLLSR GSEVIEVYNK MKEEGVEPDL VTYNTLIFGL SKSGRVTEAK KLLRVMAEKG YFPDEVTYTS
301: LMNGLCRKGD ALGALALLGE MEAKGCSPNE CTYNTLLHGL CKARLVEKAV EFYGVIRAGG LKLDTASYGT FVRALCREGR IAEKYEVFDY AVESESLTDA
401: AAYSTLESTL KWLRKAKEQG LTV

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.