Factsheet for HORVU6Hr1G013000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018210.6
HORVU0Hr1G027080.4
HORVU6Hr1G062870.1
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	HORVU0Hr1G018210.6	AT2G44950.1	21798944
AT2G17670.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT2G17670.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944
AT2G17670.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT2G17670.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT2G17670.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT2G17670.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT2G17670.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	76.96	79.79
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	76.46	79.47
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	76.46	79.27
Os02t0119700-01	Rice	mitochondrion	63.8	68.66
Zm00001d054009_P001	Maize	mitochondrion	57.47	60.37
VIT_00s1360g00010.t01	Wine grape	cytosol	27.85	57.29
OQU84226	Sorghum	cytosol, plastid	58.23	50.66
KRH48741	Soybean	cytosol	33.67	42.09
GSMUA_Achr1P18100_001	Banana	plastid	39.75	35.36
KRH66617	Soybean	plastid	36.2	33.81
CDY26819	Canola	plastid	36.2	31.43
CDY30354	Canola	plastid	35.44	30.7
Bra037262.1-P	Field mustard	plastid	35.44	30.37
Solyc02g082970.1.1	Tomato	plastid	34.68	29.21
AT2G17670.1	Thale cress	plastid	34.18	29.16
PGSC0003DMT400090670	Potato	plastid	33.92	28.69
VIT_00s0918g00010.t01	Wine grape	plastid	6.84	10.34
KRH48742	Soybean	cytosol, mitochondrion, plastid	3.54	10.22

Protein Annotations

EnsemblPlants:HORVU6Hr1G013000.2	EnsemblPlantsGene:HORVU6Hr1G013000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B46ADAA
UniProt:A0A287TCU8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:25865987..25867372

Molecular Weight (calculated)

42160.4 Da

IEP (calculated)

10.093

GRAVY (calculated)

-0.181

Length

395 amino acids

Sequence
(BLAST)

001: FPFPIPRRPP APPPPPRMGR VTQAMRAAKV PRHALVPKPP PPPPRGPRPA DGKPPRGKPP LRSPRPAAAL ALTDRPAPPA EKRPITTPAE LSAAIRAAVD
101: ADVDAAASLA LKAAPTIPLP AQSLALLLRR LAAHRSVAAR RSXHRSVAAA RDLLAALPYS ADNPAPRPAL LALADACCRR GDPREIGQLL PVLADHGVRA
201: DAHVYNALMK AHCSDSDTAG LLGVLRRMKD DGVDPDLVTY NTLVYGLARA GLVAKARTYL GAMAAEGLFP DVITYTSLMN GMCVKGDALG ALKLLDEMEA
301: NGCEPNDRTY NTLLMGLCKN RKLDNAVEVY KSIVGAGMKL EPPAYATFIR ALCRAGRVPD AYEVFDYAIE SKSFAQATAY SELESSLKWL RKMKE

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.