Factsheet for Zm00001d054009_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014640_P035
Zm00001d017475_P002
Zm00001d036507_P003
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	Zm00001d014640_P035	AT2G44950.1	21798944
AT2G17670.1	Zm00001d036507_P003	AT2G44950.1	21798944
AT2G17670.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT2G17670.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G17670.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0119700-01	Rice	mitochondrion	62.5	64.03
OQU84226	Sorghum	cytosol, plastid	75.0	62.11
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	60.11	59.32
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	59.84	59.21
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	59.57	58.79
HORVU6Hr1G013000.2	Barley	plastid	60.37	57.47
VIT_00s1360g00010.t01	Wine grape	cytosol	29.26	57.29
KRH48741	Soybean	cytosol	34.04	40.51
GSMUA_Achr1P18100_001	Banana	plastid	40.96	34.68
KRH66617	Soybean	plastid	36.17	32.15
CDY26819	Canola	plastid	37.23	30.77
CDY30354	Canola	plastid	36.44	30.04
Bra037262.1-P	Field mustard	plastid	36.44	29.72
Solyc02g082970.1.1	Tomato	plastid	36.44	29.21
PGSC0003DMT400090670	Potato	plastid	35.9	28.91
AT2G17670.1	Thale cress	plastid	35.37	28.73
VIT_00s0918g00010.t01	Wine grape	plastid	8.51	12.26
KRH48742	Soybean	cytosol, mitochondrion, plastid	3.19	8.76

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100285828	MapMan:35.1	ProteinID:AQK61048.1	UniProt:B6UAC3	EMBL:EU974188
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182F866	EnsemblPlantsGene:Zm00001d054009	EnsemblPlants:Zm00001d054009_P001	EnsemblPlants:Zm00001d054009_T001
SEG:seg	:	:	:	:	:

Description

ATP binding protein

Coordinates

chr4:+:245084211..245085341

Molecular Weight (calculated)

40058.4 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.135

Length

376 amino acids

Sequence
(BLAST)

001: MGKARHAAKL SLALIPKTKL RSHAASPSTQ PPSAHPPANP TKPGKNPHGS SKNFTAVAPV AAVHEERKPI RTPADLAAAI RAAADADIDA AAALALSAPP
101: DVPLPTHSLA LLLRRLFTTR SVAAARSLLD KLHPSGEDGC PRPNPAPRGA LLALADAVCR RGEPREISRV LPVLRDHGVR ADAHLYNALM KANVAADDPG
201: AVLRVFRQMR SDGVDPDLVT YNTLIFGLAR AGMVAKARAF LDAMAAEGHL PDVVTYTSLM NGMCVKGDAL GALKLLEEMQ GKGCQPNERT YSTLLMGLCK
301: NKKLDKAVEV YKSMAAAGTK LESPAYASFV RALCRSGSVA DAYEVFDYAI QTKSFAEVTA YSELENSLKW LRRMSS

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.