Factsheet for VIT_00s1360g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_15s0021g02140.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT2G17670.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT2G17670.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT2G17670.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48741	Soybean	cytosol	76.56	46.52
KRH66617	Soybean	plastid	75.52	34.28
Os02t0119700-01	Rice	mitochondrion	58.33	30.52
Solyc02g082970.1.1	Tomato	plastid	72.4	29.64
PGSC0003DMT400090670	Potato	plastid	71.88	29.55
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	58.33	29.47
CDY26819	Canola	plastid	69.79	29.45
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	58.33	29.4
Zm00001d054009_P001	Maize	mitochondrion	57.29	29.26
CDY30354	Canola	plastid	69.27	29.17
Bra037262.1-P	Field mustard	plastid	69.79	29.07
AT2G17670.1	Thale cress	plastid	69.79	28.94
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	57.29	28.87
HORVU6Hr1G013000.2	Barley	plastid	57.29	27.85
GSMUA_Achr1P18100_001	Banana	plastid	64.06	27.7
OQU84226	Sorghum	cytosol, plastid	57.29	24.23
VIT_00s0918g00010.t01	Wine grape	plastid	2.6	1.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100852599	wikigene:100852599	MapMan:35.1	ProteinID:CCB54215	ProteinID:CCB54215.1
UniProt:F6HJU5	EMBL:FN595844	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100852599
wikigene:LOC100852599	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00021098DD	ArrayExpress:VIT_00s1360g00010
EnsemblPlantsGene:VIT_00s1360g00010	EnsemblPlants:VIT_00s1360g00010.t01	RefSeq:XP_003635566	RefSeq:XP_003635566.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:38805607..38806431

Molecular Weight (calculated)

21277.8 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.186

Length

192 amino acids

Sequence
(BLAST)

001: MKGYCILDKG SEAIGVYKKM KEEGVEPDLV TYNTLIFGLS KSGRVKEARK FLDIMAEMGH FPDAVTYTSL MNGLCREGNA LGALALLEEM EAKGCSPNSC
101: TYNTLLHGLC KLRMLERGIE LYGVMKSGGM KLEKASYATF VRALCKEGRV AEAYEAFDYV VESKSFDDVT AYSTLENSLK WLRKAREQGL AS

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.