CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDX89437
CDY03368
CDY18962
CDY27400
CDY36901
CDY37020
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17670.1	CDX74700	AT2G44950.1	21798944
AT2G17670.1	CDY18962	AT2G44950.1	21798944
AT2G17670.1	CDY27400	AT2G44950.1	21798944
AT2G17670.1	CDY37020	AT2G44950.1	21798944
AT2G17670.1	CDY36901	AT3G48150.1	21798944
AT2G17670.1	CDY44976	AT3G48150.1	21798944
AT2G17670.1	CDY58069	AT3G48150.1	21798944
AT2G17670.1	CDY58070	AT3G48150.1	21798944
AT2G17670.1	CDY70805	AT3G48150.1	21798944
AT2G17670.1	CDX89437	AT4G25200.1	21798944
AT2G17670.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037262.1-P	Field mustard	plastid	97.81	96.75
CDY26819	Canola	plastid	94.08	94.29
AT2G17670.1	Thale cress	plastid	75.44	74.3
VIT_00s1360g00010.t01	Wine grape	cytosol	29.17	69.27
KRH48741	Soybean	cytosol	44.3	63.92
KRH66617	Soybean	plastid	53.73	57.92
Solyc02g082970.1.1	Tomato	plastid	54.17	52.67
PGSC0003DMT400090670	Potato	plastid	53.73	52.46
VIT_00s0918g00010.t01	Wine grape	plastid	28.95	50.57
GSMUA_Achr1P18100_001	Banana	plastid	43.42	44.59
Os02t0119700-01	Rice	mitochondrion	31.8	39.51
TraesCS6B01G097600.1	Wheat	cytosol, mitochondrion, plastid	31.36	37.63
TraesCS6A01G072600.1	Wheat	cytosol, mitochondrion, plastid	30.92	37.01
TraesCS6D01G070600.1	Wheat	cytosol, mitochondrion, plastid	30.92	37.01
Zm00001d054009_P001	Maize	mitochondrion	30.04	36.44
HORVU6Hr1G013000.2	Barley	plastid	30.7	35.44
OQU84226	Sorghum	cytosol, plastid	30.48	30.62

Protein Annotations

EnsemblPlants:CDY30354	EnsemblPlantsGene:GSBRNA2T00045038001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF893
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY30354	ProteinID:CDY30354.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEC87F	UniProt:A0A078GYX2	MapMan:35.1	:	:

Description

BnaA09g09230DBnaA09g09230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYX2]

Coordinates

chrLK032252:-:419674..421965

Molecular Weight (calculated)

50593.5 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.356

Length

456 amino acids

Sequence
(BLAST)

001: MGKIPSSFRS LTSTQLIKKP TPPPPPRNSQ NRITGTHHDS PKPPHTTHSR NPFKSPNLSS AKSLFNSIAA TSKTPLDTKF HNSVLQSYAS IASVDDAVNL
101: FHHILKSQPT FSPEPSTFNI LLSHACRSPD SPLSNVHRVL NLMVNSGVAP NNVTTDIAAR SLCESDRITD AKDLVMELSE KHSPPDMFTY NYLLKQLCKY
201: ESLNAVYEFR DKMKESFNVK PDLVSYTILI DHVCNSKNLR EAMKLVSDLG VDGFKPDCFV YNTIMKGFCT LSKGSEAVGV FKKMKEDGVE PDRITYNTLI
301: FGLSKSGRIE EARKYLQTMD EAGYEPDAVA YTALMNGMCR KGASLGALSL LEEMEARGCA PNDVTYNTLL YGLCKGRLME KGIEFYEMMR SKGLKLESYA
401: YATLVRALVR SGKVAEAYEV FDYAVESKSL SDASAYATLE TSLKWVKKAK EQGLAD

Best Arabidopsis Sequence Match ( AT2G17670.1 )
(BLAST)

001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g17670 [Source:UniProtKB/Swiss-Prot;Acc:Q84J71]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.