Factsheet for Solyc03g111100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039289	Potato	nucleus	73.55	73.79
PGSC0003DMT400062383	Potato	cytosol	26.13	56.64
Bra038625.1-P	Field mustard	cytosol	46.13	48.47
Bra038626.1-P	Field mustard	plastid	40.0	46.27
AT5G63350.1	Thale cress	nucleus	44.52	45.7
AT3G48510.1	Thale cress	cytosol	42.26	44.56
KRH57200	Soybean	plastid	40.97	43.94
Bra022512.1-P	Field mustard	nucleus	39.35	43.57
KRH03914	Soybean	plastid	40.65	43.45
CDY45734	Canola	nucleus	40.97	43.2
AT5G50360.1	Thale cress	nucleus	40.32	42.96
CDY53329	Canola	cytosol	41.29	42.81
Bra029900.1-P	Field mustard	cytosol	41.29	42.81
KRH63730	Soybean	plastid	33.55	41.94
CDX68466	Canola	cytosol	40.32	41.67
KRH54218	Soybean	plastid	32.9	41.46
Solyc02g068030.1.1	Tomato	cytosol	37.1	41.07
Solyc02g093890.1.1	Tomato	cytosol	32.9	37.09
CDY37923	Canola	nucleus	29.03	34.88
Bra019549.1-P	Field mustard	nucleus	29.03	34.88
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	33.55	34.67
GSMUA_Achr3P17030_001	Banana	cytosol	32.58	34.12
GSMUA_Achr8P28790_001	Banana	cytosol	31.29	33.45
TraesCS3D01G219400.1	Wheat	mitochondrion	31.61	32.67
TraesCS3A01G217400.1	Wheat	mitochondrion	29.68	30.98
TraesCS3B01G247700.1	Wheat	mitochondrion	29.35	30.85
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	40.65	28.12
CDX91547	Canola	nucleus	41.61	27.04
Os12t0242500-01	Rice	extracellular	27.74	26.14
CDY56888	Canola	cytosol	21.61	26.07
CDY16370	Canola	plastid	40.32	25.77
Zm00001d023799_P001	Maize	mitochondrion	26.13	25.47
Zm00001d023800_P001	Maize	mitochondrion	26.13	25.47
EES15909	Sorghum	peroxisome	27.42	25.45
Bra029231.1-P	Field mustard	nucleus	39.68	17.2

Protein Annotations

EnsemblPlants:Solyc03g111100.1.1	EnsemblPlantsGene:Solyc03g111100.1	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	SEG:seg	UniParc:UPI0002768D0B
UniProt:K4BJX3	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:61766912..61767844

Molecular Weight (calculated)

33823.3 Da

IEP (calculated)

10.269

GRAVY (calculated)

-0.574

Length

310 amino acids

Sequence
(BLAST)

001: MDGRGGCCIA RYAGGAYDMS KVDRIMLKFR PIAPKPAAAG TSVSGTTTPP QKSEVPVRTG RWKRRYVKDN KNSNNNKRSS SGGCSPTPSR RKRKARSVEE
101: NDSSAKSVSG GETAVTLPLL SEIPERKDNS VDMMKKNAPI WLSFGGNQGN NNDNSNNNNG QLQGVAMDRS VVMFPQPVRV VGSWVKVESV TDAWVEGYGL
201: GRTDEEKLIN LERDSCPGFI SDGLNRVRWA NKAYKGMVGD GAGEVVVWLV MKDAVRLPES KSTAAFTCRV RVVRCGKEKN SLILPCDVWR MDGGGFAWRL
301: DTEAALSLGR

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.