CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022512.1-P	Field mustard	nucleus	51.99	88.57
CDY16370	Canola	plastid	86.58	85.15
AT5G50360.1	Thale cress	nucleus	39.41	64.6
CDY53329	Canola	cytosol	27.25	43.48
CDY45734	Canola	nucleus	26.21	42.52
CDX68466	Canola	cytosol	26.62	42.33
Solyc03g111100.1.1	Tomato	nucleus	27.04	41.61
PGSC0003DMT400039289	Potato	nucleus	26.83	41.42
CDY37923	Canola	nucleus	21.8	40.31
KRH54218	Soybean	plastid	20.13	39.02
KRH63730	Soybean	plastid	19.5	37.5
KRH03914	Soybean	plastid	22.22	36.55
KRH57200	Soybean	plastid	21.59	35.64
PGSC0003DMT400062383	Potato	cytosol	10.48	34.97
CDY58582	Canola	cytosol	19.92	33.81
CDY34167	Canola	cytosol	19.29	33.21
CDY52703	Canola	cytosol, plastid	19.29	33.21
CDY36383	Canola	cytosol, plastid	19.08	32.85
GSMUA_Achr3P17030_001	Banana	cytosol	20.34	32.77
CDX83671	Canola	cytosol	19.29	32.62
GSMUA_Achr8P28790_001	Banana	cytosol	19.71	32.41
CDY13694	Canola	cytosol	19.08	32.27
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	30.19	32.14
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	20.13	32.0
CDY52704	Canola	cytosol, nucleus, plastid	19.29	29.68
CDY36382	Canola	cytosol, nucleus, plastid	18.87	29.22
CDY56888	Canola	cytosol	15.09	28.02
TraesCS3D01G219400.1	Wheat	mitochondrion	15.09	24.0
TraesCS3B01G247700.1	Wheat	mitochondrion	14.68	23.73
TraesCS3A01G217400.1	Wheat	mitochondrion	14.47	23.23
EES15909	Sorghum	peroxisome	15.3	21.86
Zm00001d023799_P001	Maize	mitochondrion	14.47	21.7
Zm00001d023800_P001	Maize	mitochondrion	14.47	21.7
Os12t0242500-01	Rice	extracellular	14.47	20.97

Protein Annotations

EnsemblPlants:CDX91547	EnsemblPlantsGene:GSBRNA2T00152933001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDX91547	ProteinID:CDX91547.1
SEG:seg	UniParc:UPI0004EE32AB	MapMan:35.2	:	:	:

Description

BnaC02g16130D

Coordinates

chrLK031868:+:270068..273575

Molecular Weight (calculated)

52851.5 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.358

Length

477 amino acids

Sequence
(BLAST)

001: MNFRGGCCIA RYGGSGGDMS KVDRIMLRYR PIAPRPDSGG SSSPPLDSVS PKSRRGKRKY SKENSSSSVN GGGSVNSNGN SKRRRNEEAK NGSETVTLPL
101: LPETPERRKE PPRVLFGAAA SSWLSFGDDG RYKAAKKSLD LTEGLLTART ETVVSSLLTV ECVTEGEYEI GCTDEEKKMN LERDTCPGFI SDGLGRVVWT
201: NGSYRDLVIG KDKCCSKMSV WLVMKEKPLL TKRTFTCRMR LQYTCRDNEV SSIISPCDGW KMNDGGFAWR LDVNAALFLG RHELQSRDGG RALLKTIIKL
301: LDMNFDDDEV LSLVEKYGIE ETEDAIKKIP PSKFMNIFSP MQNENFLKDI FNLNKDTQEY LDSRGLSIAL RSLGFVFSEV NAQNLAHRLT GSGSAFGFNY
401: RIRLSLRSFC EIACLACIHM NVVREVPVGA MMVAMVGFLP KPSPSPTVSA SSNNTASPIP PLLPVIYNKT RIWEALF

Best Arabidopsis Sequence Match ( AT5G50360.1 )
(BLAST)

001: MNFRGGCCIA RYGGSGGGND MSKVDRIMLR YRPIAPRPDS GGSPASPTEK NGSVITNVSS RSRRGKRKYS KENNSSSTGS VNSNGNSKRQ RNDETKNGSG
101: GGREIVTLPL LPETPEKKDS PLKAKAAPEL GAAALWLSFN DGASYNRRYQ TELMTETVVS SLLTVECVTE RLMEGEYELG CTDEERKMNL ERDTCPGFIS
201: DGLGRVIWTN GSYRELVVGK DHEQCSKMSV WLVMKEKPLV TYRTFTCRMR LQYTCRDKEV SSITSFCDVW RMSDGGFAWR LDVDAALCLG R

Arabidopsis Description

Uncharacterized protein At5g50360 [Source:UniProtKB/TrEMBL;Acc:Q9FK36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.