CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025261.1-P	Field mustard	cytosol	97.87	98.22
CDX83671	Canola	cytosol	97.16	97.16
CDY58582	Canola	cytosol	81.91	82.21
CDY34167	Canola	cytosol	79.79	81.23
AT3G27250.1	Thale cress	cytosol	78.01	78.01
CDY36383	Canola	cytosol, plastid	58.51	59.57
CDY52703	Canola	cytosol, plastid	58.51	59.57
PGSC0003DMT400003036	Potato	cytosol	12.77	49.32
VIT_14s0171g00360.t01	Wine grape	nucleus	43.26	43.57
KRG94328	Soybean	cytosol	45.04	41.1
KRH57635	Soybean	plastid	44.68	41.04
Solyc02g068030.1.1	Tomato	cytosol	36.17	36.43
Solyc02g093890.1.1	Tomato	cytosol	34.4	35.27
PGSC0003DMT400052105	Potato	cytosol	34.04	34.04
CDY53329	Canola	cytosol	35.82	33.78
CDX68466	Canola	cytosol	35.11	33.0
CDY45734	Canola	nucleus	34.4	32.99
CDY37923	Canola	nucleus	28.01	30.62
GSMUA_Achr8P28790_001	Banana	cytosol	30.14	29.31
GSMUA_Achr3P17030_001	Banana	cytosol	30.5	29.05
CDY52704	Canola	cytosol, nucleus, plastid	31.91	29.03
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	30.5	28.67
CDY36382	Canola	cytosol, nucleus, plastid	31.21	28.57
TraesCS3D01G219400.1	Wheat	mitochondrion	25.53	24.0
TraesCS3B01G247700.1	Wheat	mitochondrion	24.47	23.39
TraesCS3A01G217400.1	Wheat	mitochondrion	24.47	23.23
CDY56888	Canola	cytosol	20.57	22.57
Zm00001d023800_P001	Maize	mitochondrion	24.82	22.01
Zm00001d023799_P001	Maize	mitochondrion	24.82	22.01
EES15909	Sorghum	peroxisome	24.82	20.96
Os12t0242500-01	Rice	extracellular	23.76	20.36
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	31.91	20.09
CDX91547	Canola	nucleus	32.27	19.08
CDY16370	Canola	plastid	30.85	17.94

Protein Annotations

EnsemblPlants:CDY13694	EnsemblPlantsGene:GSBRNA2T00078119001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY13694	ProteinID:CDY13694.1
SEG:seg	UniParc:UPI0004EDE4B5	UniProt:A0A078FLA0	MapMan:35.2	:	:

Description

BnaA06g32290DBnaA06g32290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLA0]

Coordinates

chrLK032037:+:617844..618869

Molecular Weight (calculated)

31612.8 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.577

Length

282 amino acids

Sequence
(BLAST)

001: MEQDEWLGTL RYAGKAQDKV SVDSLMLRYR PIAPKPTTGQ PCGTGDNNNN NNSYGKRTKR KYVRVSKNNK TTCRGKSRSD VSDGREQTGV VTLQLMPEKS
101: DPSGDYTPLD QDSLDPSLKT IIGVETLETN TWATFNGGET AEVETWVTVE SVTGVYDGSS TSHAVECTDV EMVDNLGKDT CPAFVSDASN RVVWVNEAYR
201: RNVSGEDWSS SLSLPDVMVW LVAEESTVAM YCNYRAFTCR VRMQYTWQET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.