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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 2
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:extracellular, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13694 Canola cytosol 98.22 97.87
CDX83671 Canola cytosol 95.37 95.04
Bra032992.1-P Field mustard cytosol 79.72 80.87
AT3G27250.1 Thale cress cytosol 77.58 77.31
Bra025545.1-P Field mustard cytosol, plastid 59.07 59.93
PGSC0003DMT400003036 Potato cytosol 12.81 49.32
VIT_14s0171g00360.t01 Wine grape nucleus 42.35 42.5
KRH57635 Soybean plastid 45.2 41.37
KRG94328 Soybean cytosol 44.84 40.78
Solyc02g068030.1.1 Tomato cytosol 35.23 35.36
Solyc02g093890.1.1 Tomato cytosol 34.52 35.27
Bra038626.1-P Field mustard plastid 33.1 34.7
PGSC0003DMT400052105 Potato cytosol 34.16 34.04
Bra029900.1-P Field mustard cytosol 35.94 33.78
Bra038625.1-P Field mustard cytosol 34.52 32.88
Bra022512.1-P Field mustard nucleus 32.38 32.5
Bra019549.1-P Field mustard nucleus 27.76 30.23
GSMUA_Achr8P28790_001 Banana cytosol 29.89 28.97
GSMUA_Achr3P17030_001 Banana cytosol 30.25 28.72
Bra025546.1-P Field mustard cytosol, nucleus, plastid 31.67 28.71
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 30.25 28.33
TraesCS3D01G219400.1 Wheat mitochondrion 26.33 24.67
TraesCS3B01G247700.1 Wheat mitochondrion 25.27 24.07
TraesCS3A01G217400.1 Wheat mitochondrion 25.27 23.91
Zm00001d023799_P001 Maize mitochondrion 25.62 22.64
Zm00001d023800_P001 Maize mitochondrion 25.62 22.64
EES15909 Sorghum peroxisome 25.62 21.56
Os12t0242500-01 Rice extracellular 24.56 20.97
Bra029231.1-P Field mustard nucleus 31.32 12.31
Protein Annotations
EnsemblPlants:Bra025261.1EnsemblPlants:Bra025261.1-PEnsemblPlantsGene:Bra025261PANTHER:PTHR33595PANTHER:PTHR33595:SF4SEG:seg
UniParc:UPI000253F5B1UniProt:M4E905MapMan:35.2:::
Description
AT3G27250 (E=5e-128) | unknown protein
Coordinates
chrA06:-:22527661..22528506
Molecular Weight (calculated)
31528.7 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.568
Length
281 amino acids
Sequence
(BLAST)
001: MEQDEWLGTL RYASKAQDKV SVDSLMLRYR PIAPKPTTGQ PCGTGDNNNN NSYGKRTKRK YVRVSKNNKT TCRGKSRSDV SDGREQTGVV TLQLMPEKSD
101: PSGDYTPLDQ DSLDPSLKTI IGVETLETNT WATFNGGETA EVETWVTVES VTGVYDGSST SHAVECTDVE MVDNLGKDTC PAFVSDASNR VVWVNEAYRR
201: NVSGEDWSSS LSLPDVMVWL VAEESTVAMY CNYRAFTCRV RMQYTWQETK YTKTVPCDVW KMEFGGFAWR LDTTAALTLW L
Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)
001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL
Arabidopsis Description
At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.