CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13694	Canola	cytosol	97.16	97.16
Bra025261.1-P	Field mustard	cytosol	95.04	95.37
CDY58582	Canola	cytosol	80.14	80.43
CDY34167	Canola	cytosol	78.01	79.42
AT3G27250.1	Thale cress	cytosol	75.53	75.53
CDY36383	Canola	cytosol, plastid	57.45	58.48
CDY52703	Canola	cytosol, plastid	57.45	58.48
PGSC0003DMT400003036	Potato	cytosol	12.77	49.32
VIT_14s0171g00360.t01	Wine grape	nucleus	42.91	43.21
KRG94328	Soybean	cytosol	44.33	40.45
KRH57635	Soybean	plastid	43.97	40.39
Solyc02g068030.1.1	Tomato	cytosol	36.52	36.79
Solyc02g093890.1.1	Tomato	cytosol	35.11	36.0
PGSC0003DMT400052105	Potato	cytosol	34.75	34.75
CDY53329	Canola	cytosol	36.17	34.11
CDY45734	Canola	nucleus	34.75	33.33
CDX68466	Canola	cytosol	35.46	33.33
CDY37923	Canola	nucleus	28.37	31.01
CDY52704	Canola	cytosol, nucleus, plastid	32.62	29.68
GSMUA_Achr8P28790_001	Banana	cytosol	30.5	29.66
CDY36382	Canola	cytosol, nucleus, plastid	31.91	29.22
GSMUA_Achr3P17030_001	Banana	cytosol	30.5	29.05
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	30.5	28.67
TraesCS3D01G219400.1	Wheat	mitochondrion	25.53	24.0
TraesCS3B01G247700.1	Wheat	mitochondrion	24.47	23.39
TraesCS3A01G217400.1	Wheat	mitochondrion	24.47	23.23
CDY56888	Canola	cytosol	20.92	22.96
Zm00001d023800_P001	Maize	mitochondrion	24.82	22.01
Zm00001d023799_P001	Maize	mitochondrion	24.82	22.01
EES15909	Sorghum	peroxisome	24.82	20.96
Os12t0242500-01	Rice	extracellular	23.76	20.36
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	31.91	20.09
CDX91547	Canola	nucleus	32.62	19.29
CDY16370	Canola	plastid	31.21	18.14

Protein Annotations

EnsemblPlants:CDX83671	EnsemblPlantsGene:GSBRNA2T00139373001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDX83671	ProteinID:CDX83671.1
SEG:seg	UniParc:UPI0004EBD169	MapMan:35.2	:	:	:

Description

BnaC07g24110D

Coordinates

chrLK031833:+:1531854..1532702

Molecular Weight (calculated)

31659.9 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.602

Length

282 amino acids

Sequence
(BLAST)

001: MEQDEWLNTL RYAGKVQDKV SVDSLMLRYR PIAPKPTTGQ PCGTGDNNNN NNSYGKRTKR KYVRVSKNNK TTCRGKSRSD VSDGREQTGV VTLQLMPEKS
101: DPSGDYTPVD QDSLDPSLKT IIGVETLENS TWATFNGGGT AEVETWVTVE SVTGEYDGSS TSHAVECTDV EMMDNLGKDT CPAFVSDASN RVVWVNEAYR
201: RNVSGEDWSS SLSLPDVMVW LVAEESTVAM YCNYRAFTCR VRMQYTWQET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.