CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53329	Canola	cytosol	88.67	88.96
AT3G48510.1	Thale cress	cytosol	70.67	72.11
CDY37923	Canola	nucleus	61.67	71.71
CDY45734	Canola	nucleus	58.67	59.86
CDY56888	Canola	cytosol	41.33	48.25
KRH03914	Soybean	plastid	42.0	43.45
KRH57200	Soybean	plastid	41.67	43.25
KRH54218	Soybean	plastid	35.33	43.09
KRH63730	Soybean	plastid	34.67	41.94
Solyc03g111100.1.1	Tomato	nucleus	41.67	40.32
PGSC0003DMT400039289	Potato	nucleus	41.0	39.81
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	54.67	36.61
PGSC0003DMT400062383	Potato	cytosol	17.0	35.66
CDX83671	Canola	cytosol	33.33	35.46
CDY58582	Canola	cytosol	33.0	35.23
CDY13694	Canola	cytosol	33.0	35.11
CDY34167	Canola	cytosol	32.33	35.02
GSMUA_Achr8P28790_001	Banana	cytosol	31.67	32.76
CDY52703	Canola	cytosol, plastid	30.0	32.49
GSMUA_Achr3P17030_001	Banana	cytosol	32.0	32.43
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	32.33	32.33
CDY36383	Canola	cytosol, plastid	29.67	32.13
TraesCS3B01G247700.1	Wheat	mitochondrion	29.0	29.49
TraesCS3D01G219400.1	Wheat	mitochondrion	29.33	29.33
TraesCS3A01G217400.1	Wheat	mitochondrion	29.0	29.29
CDY36382	Canola	cytosol, nucleus, plastid	29.0	28.25
CDY52704	Canola	cytosol, nucleus, plastid	28.67	27.74
Zm00001d023799_P001	Maize	mitochondrion	29.33	27.67
Zm00001d023800_P001	Maize	mitochondrion	29.33	27.67
CDY16370	Canola	plastid	43.67	27.01
CDX91547	Canola	nucleus	42.33	26.62
Os12t0242500-01	Rice	extracellular	29.0	26.44
EES15909	Sorghum	peroxisome	29.0	26.05

Protein Annotations

EnsemblPlants:CDX68466	EnsemblPlantsGene:GSBRNA2T00125926001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDX68466	ProteinID:CDX68466.1
SEG:seg	UniParc:UPI0004EC15BB	MapMan:35.2	:	:	:

Description

BnaC01g25440D

Coordinates

chrLK031788:+:1963766..1964668

Molecular Weight (calculated)

33191.5 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.639

Length

300 amino acids

Sequence
(BLAST)

001: MDSRGGCCIA RYAGGGGTYH YDLSKADRIM LRFRPIAPKP TSDGGGGKPV SSGESGGGSS YVSFKGGRRK RKCQQKENSG NARRCTPRRK SDKSVGHGGH
101: TKVTLSLLPE TPDEGDFTDL KVSVPSVEKQ HGPFRLSFSD GGEMFSPAYQ TVDVMRKKVV ISSCMTVERV TDAWMDGYGL GRSDEERKMN LVRDTCPGFI
201: SDCSGRVTWT NDAYRKMARD NIPEEKGSPE NMSGDSFQVI VRLVMRDRPM ITYPAFTCRV KLQFTCQDRE RSSVTVPCDA WRMDNGGFAW RLDVKAALCL

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.