CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09670

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	KRH09670	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54218	Soybean	plastid	70.16	70.73
KRH57200	Soybean	plastid	50.0	42.91
KRH03914	Soybean	plastid	49.6	42.41
Bra038626.1-P	Field mustard	plastid	45.16	41.79
Bra038625.1-P	Field mustard	cytosol	46.37	38.98
CDY45734	Canola	nucleus	45.97	38.78
AT5G63350.1	Thale cress	nucleus	47.18	38.74
AT3G48510.1	Thale cress	cytosol	44.35	37.41
Bra019549.1-P	Field mustard	nucleus	37.1	35.66
CDY37923	Canola	nucleus	37.1	35.66
Bra029900.1-P	Field mustard	cytosol	42.34	35.12
CDY53329	Canola	cytosol	42.34	35.12
PGSC0003DMT400062383	Potato	cytosol	20.16	34.97
CDX68466	Canola	cytosol	41.94	34.67
AT5G50360.1	Thale cress	nucleus	39.92	34.02
Solyc03g111100.1.1	Tomato	nucleus	41.94	33.55
Bra022512.1-P	Field mustard	nucleus	37.5	33.21
PGSC0003DMT400039289	Potato	nucleus	40.73	32.69
GSMUA_Achr3P17030_001	Banana	cytosol	38.31	32.09
GSMUA_Achr8P28790_001	Banana	cytosol	36.29	31.03
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	36.29	30.0
KRH57635	Soybean	plastid	37.1	29.97
TraesCS3B01G247700.1	Wheat	mitochondrion	32.26	27.12
KRG94328	Soybean	cytosol	33.47	26.86
TraesCS3D01G219400.1	Wheat	mitochondrion	32.26	26.67
TraesCS3A01G217400.1	Wheat	mitochondrion	31.85	26.6
CDY56888	Canola	cytosol	27.02	26.07
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	43.55	24.11
Os12t0242500-01	Rice	extracellular	31.45	23.71
Zm00001d023799_P001	Maize	mitochondrion	28.63	22.33
Zm00001d023800_P001	Maize	mitochondrion	28.63	22.33
EES15909	Sorghum	peroxisome	29.03	21.56
CDY16370	Canola	plastid	38.31	19.59
CDX91547	Canola	nucleus	37.5	19.5
Bra029231.1-P	Field mustard	nucleus	42.34	14.69

Protein Annotations

EMBL:ACUP02002709	EnsemblPlants:KRH63730	EnsemblPlantsGene:GLYMA_04G193900	EntrezGene:102664115	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3
ProteinID:KRH63730	ProteinID:KRH63730.1	SEG:seg	UniParc:UPI00023C034A	UniProt:I1JXH6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:-:46559028..46560288

Molecular Weight (calculated)

27019.3 Da

IEP (calculated)

9.785

GRAVY (calculated)

-0.402

Length

248 amino acids

Sequence
(BLAST)

001: MSKMDKIMLR FRPIAPKPLP AAAAALSDAS SSESTGSAKR KDNTASKRCS RGIRRRRNAP PPPPSPAVTL PLLPGSPGPK KITSELKNKN VPVWLSFENN
101: FENRGGAASE KLDPCWYSQA TAAAGSVVTV ECVMDTWQQQ DEGLGLGSGD EERKVKLKED TCPGFISDGY GRVTWTNEAY RETVGAGGVW LAMKVAVPYP
201: YRGFTCRVRV RYACGIERTV PCDVWRMDSG GFAWRLDVKA ALSLSLAF

Best Arabidopsis Sequence Match ( AT5G63350.1 )
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.