Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68466 | Canola | cytosol | 72.11 | 70.67 |
| Bra029900.1-P | Field mustard | cytosol | 69.39 | 68.23 |
| CDY53329 | Canola | cytosol | 69.39 | 68.23 |
| Bra019549.1-P | Field mustard | nucleus | 57.82 | 65.89 |
| CDY37923 | Canola | nucleus | 57.82 | 65.89 |
| AT5G63350.1 | Thale cress | nucleus | 63.61 | 61.92 |
| CDY56888 | Canola | cytosol | 39.8 | 45.53 |
| AT5G50360.1 | Thale cress | nucleus | 44.9 | 45.36 |
| KRH63730 | Soybean | plastid | 37.41 | 44.35 |
| KRH54218 | Soybean | plastid | 37.07 | 44.31 |
| KRH57200 | Soybean | plastid | 43.54 | 44.29 |
| KRH03914 | Soybean | plastid | 43.54 | 44.14 |
| Solyc03g111100.1.1 | Tomato | nucleus | 44.56 | 42.26 |
| PGSC0003DMT400039289 | Potato | nucleus | 42.18 | 40.13 |
| PGSC0003DMT400062383 | Potato | cytosol | 17.69 | 36.36 |
| AT3G27250.1 | Thale cress | cytosol | 33.67 | 35.11 |
| AT5G40800.1 | Thale cress | cytosol | 31.97 | 34.56 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 32.99 | 32.77 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 31.63 | 32.07 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 32.31 | 31.67 |
| AT5G40790.1 | Thale cress | cytosol | 29.59 | 28.71 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 28.57 | 28.0 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 27.89 | 27.61 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 27.21 | 27.12 |
| EES15909 | Sorghum | peroxisome | 29.25 | 25.75 |
| Zm00001d023799_P001 | Maize | mitochondrion | 27.55 | 25.47 |
| Zm00001d023800_P001 | Maize | mitochondrion | 27.55 | 25.47 |
| Os12t0242500-01 | Rice | extracellular | 27.21 | 24.32 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824010 | UniProt:A0A178V8B0 | ProteinID:AEE78425.1 | EMBL:AK229333 | ArrayExpress:AT3G48510 |
| EnsemblPlantsGene:AT3G48510 | RefSeq:AT3G48510 | TAIR:AT3G48510 | RefSeq:AT3G48510-TAIR-G | EnsemblPlants:AT3G48510.1 | TAIR:AT3G48510.1 |
| Unigene:At.35716 | EMBL:BT025864 | ProteinID:CAB62340.1 | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_566907.1 |
| ProteinID:OAP01921.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33595 |
| PANTHER:PTHR33595:SF3 | UniProt:Q9SMP6 | UniParc:UPI00000A237D | SEG:seg | : | : |
Description
At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
Coordinates
chr3:-:17967354..17968590
Molecular Weight (calculated)
32217.8 Da
IEP (calculated)
9.916
GRAVY (calculated)
-0.430
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.