Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G226200.1 | |
| TraesCS5B01G224700.3 | |
| TraesCS5D01G233400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63350.1 | TraesCS5A01G226200.1 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | TraesCS5B01G224700.3 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | TraesCS5D01G233400.1 | AT1G80650.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 88.14 | 87.54 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 81.36 | 80.0 |
| Os12t0242500-01 | Rice | extracellular | 59.66 | 53.5 |
| Zm00001d023800_P001 | Maize | mitochondrion | 49.49 | 45.91 |
| Zm00001d023799_P001 | Maize | mitochondrion | 49.49 | 45.91 |
| EES15909 | Sorghum | peroxisome | 50.51 | 44.61 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 37.29 | 36.67 |
| PGSC0003DMT400003036 | Potato | cytosol | 8.81 | 35.62 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 33.22 | 33.11 |
| KRH63730 | Soybean | plastid | 27.12 | 32.26 |
| KRH54218 | Soybean | plastid | 26.78 | 32.11 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 31.53 | 32.07 |
| KRH03914 | Soybean | plastid | 30.17 | 30.69 |
| KRH57200 | Soybean | plastid | 29.49 | 30.1 |
| Solyc03g111100.1.1 | Tomato | nucleus | 30.85 | 29.35 |
| AT5G63350.1 | Thale cress | nucleus | 29.83 | 29.14 |
| Bra029900.1-P | Field mustard | cytosol | 29.49 | 29.1 |
| CDY53329 | Canola | cytosol | 29.49 | 29.1 |
| CDX68466 | Canola | cytosol | 29.49 | 29.0 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 26.78 | 28.21 |
| PGSC0003DMT400039289 | Potato | nucleus | 29.49 | 28.16 |
| CDY45734 | Canola | nucleus | 27.46 | 27.55 |
| Bra038625.1-P | Field mustard | cytosol | 27.46 | 27.46 |
| PGSC0003DMT400062383 | Potato | cytosol | 13.22 | 27.27 |
| Bra038626.1-P | Field mustard | plastid | 24.75 | 27.24 |
| AT3G48510.1 | Thale cress | cytosol | 27.12 | 27.21 |
| AT5G50360.1 | Thale cress | nucleus | 26.78 | 27.15 |
| KRH57635 | Soybean | plastid | 27.12 | 26.06 |
| Solyc02g068030.1.1 | Tomato | cytosol | 24.07 | 25.36 |
| Bra025261.1-P | Field mustard | cytosol | 24.07 | 25.27 |
| Bra022512.1-P | Field mustard | nucleus | 23.73 | 25.0 |
| KRG94328 | Soybean | cytosol | 25.76 | 24.6 |
| AT3G27250.1 | Thale cress | cytosol | 23.39 | 24.47 |
| CDX83671 | Canola | cytosol | 23.39 | 24.47 |
| CDY13694 | Canola | cytosol | 23.39 | 24.47 |
| CDY34167 | Canola | cytosol | 22.37 | 23.83 |
| Bra032992.1-P | Field mustard | cytosol | 22.37 | 23.83 |
| PGSC0003DMT400052105 | Potato | cytosol | 22.71 | 23.76 |
| AT5G40800.1 | Thale cress | cytosol | 21.69 | 23.53 |
| CDY36383 | Canola | cytosol, plastid | 22.03 | 23.47 |
| Bra025545.1-P | Field mustard | cytosol, plastid | 22.03 | 23.47 |
| CDY52703 | Canola | cytosol, plastid | 21.69 | 23.1 |
| CDY37923 | Canola | nucleus | 20.0 | 22.87 |
| Bra019549.1-P | Field mustard | nucleus | 20.0 | 22.87 |
| CDY58582 | Canola | cytosol | 21.69 | 22.78 |
| AT5G40790.1 | Thale cress | cytosol | 23.05 | 22.44 |
| Solyc02g093890.1.1 | Tomato | cytosol | 20.68 | 22.18 |
| CDY52704 | Canola | cytosol, nucleus, plastid | 22.71 | 21.61 |
| CDY36382 | Canola | cytosol, nucleus, plastid | 22.37 | 21.43 |
| Bra025546.1-P | Field mustard | cytosol, nucleus, plastid | 22.37 | 21.29 |
| CDY30747 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.1 | 17.19 |
| CDY56888 | Canola | cytosol | 13.22 | 15.18 |
| CDX91547 | Canola | nucleus | 23.73 | 14.68 |
| CDY16370 | Canola | plastid | 23.39 | 14.23 |
| Bra029231.1-P | Field mustard | nucleus | 26.1 | 10.77 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G247700.1 | EnsemblPlantsGene:TraesCS3B01G247700 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF3 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:-:394087995..394088882
Molecular Weight (calculated)
30558.8 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.133
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMERKGGCCL APRAAQAGQG WHMGRAMLKF RPIAPKPAAM SPAPMPAVPA GKGKGKRKAV AGPGGTGRRG PKPKKSATVA APTTQKLDYV QDKRLSSPSS
101: SSSGMTSVDS SPPPPLPATL PLMPALPAEE GFGGAAPVAN LASAHVVRQP QALRQVVSWV TVEDVTSIWR DGEAPYAAAC GGDEAPTFVS DQCGRVTWTN
201: VAFNRAVSGR EDADATMAPS AAASEVRVVL AAKDGAPVPA WGSCAGFTCR VRVPYACPRR GSLVAPCDVW RLDAGGYLWR LDLQATLSLS LGGFI
101: SSSGMTSVDS SPPPPLPATL PLMPALPAEE GFGGAAPVAN LASAHVVRQP QALRQVVSWV TVEDVTSIWR DGEAPYAAAC GGDEAPTFVS DQCGRVTWTN
201: VAFNRAVSGR EDADATMAPS AAASEVRVVL AAKDGAPVPA WGSCAGFTCR VRVPYACPRR GSLVAPCDVW RLDAGGYLWR LDLQATLSLS LGGFI
001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.