Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13694 | Canola | cytosol | 78.01 | 78.01 |
| Bra025261.1-P | Field mustard | cytosol | 77.31 | 77.58 |
| CDX83671 | Canola | cytosol | 75.53 | 75.53 |
| Bra032992.1-P | Field mustard | cytosol | 74.11 | 75.45 |
| CDY34167 | Canola | cytosol | 73.76 | 75.09 |
| CDY58582 | Canola | cytosol | 72.34 | 72.6 |
| AT5G40800.1 | Thale cress | cytosol | 54.61 | 56.62 |
| PGSC0003DMT400003036 | Potato | cytosol | 13.12 | 50.68 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 42.55 | 42.86 |
| KRH57635 | Soybean | plastid | 41.84 | 38.44 |
| KRG94328 | Soybean | cytosol | 40.78 | 37.22 |
| Solyc02g068030.1.1 | Tomato | cytosol | 36.52 | 36.79 |
| Solyc02g093890.1.1 | Tomato | cytosol | 34.75 | 35.64 |
| PGSC0003DMT400052105 | Potato | cytosol | 35.11 | 35.11 |
| AT3G48510.1 | Thale cress | cytosol | 35.11 | 33.67 |
| AT5G63350.1 | Thale cress | nucleus | 35.82 | 33.44 |
| AT5G40790.1 | Thale cress | cytosol | 35.11 | 32.67 |
| AT5G50360.1 | Thale cress | nucleus | 32.62 | 31.62 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 30.85 | 29.39 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 30.85 | 29.0 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 28.37 | 27.59 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 24.47 | 23.39 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 24.11 | 22.67 |
| Os12t0242500-01 | Rice | extracellular | 26.24 | 22.49 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 23.4 | 22.22 |
| Zm00001d023799_P001 | Maize | mitochondrion | 23.05 | 20.44 |
| Zm00001d023800_P001 | Maize | mitochondrion | 23.05 | 20.44 |
| EES15909 | Sorghum | peroxisome | 24.11 | 20.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:822344 | UniProt:A0A178VG13 | ProteinID:AEE77283.1 | EMBL:AK221572 | ProteinID:ANM64233.1 |
| ArrayExpress:AT3G27250 | EnsemblPlantsGene:AT3G27250 | RefSeq:AT3G27250 | TAIR:AT3G27250 | RefSeq:AT3G27250-TAIR-G | EnsemblPlants:AT3G27250.1 |
| TAIR:AT3G27250.1 | ProteinID:BAB02120.1 | EMBL:BT012643 | GO:GO:0008150 | RefSeq:NP_001326277.1 | RefSeq:NP_189361.1 |
| ProteinID:OAP04305.1 | PO:PO:0000293 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF4 | UniProt:Q9LK28 | UniParc:UPI000009D4B8 |
| SEG:seg | : | : | : | : | : |
Description
At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
Coordinates
chr3:+:10061009..10062821
Molecular Weight (calculated)
31350.6 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.494
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.