Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005754_P001 | |
| Zm00001d020472_P001 | |
| Zm00001d020476_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63350.1 | Zm00001d005754_P001 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | Zm00001d020472_P001 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | Zm00001d020476_P001 | AT1G80650.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023799_P001 | Maize | mitochondrion | 100.0 | 100.0 |
| EES15909 | Sorghum | peroxisome | 63.52 | 60.48 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 47.48 | 50.84 |
| Os12t0242500-01 | Rice | extracellular | 51.57 | 49.85 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 45.91 | 49.49 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 45.91 | 48.67 |
| PGSC0003DMT400003036 | Potato | cytosol | 7.86 | 34.25 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 30.5 | 32.33 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 29.25 | 32.07 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 28.62 | 30.74 |
| CDX68466 | Canola | cytosol | 27.67 | 29.33 |
| KRH63730 | Soybean | plastid | 22.33 | 28.63 |
| CDY53329 | Canola | cytosol | 26.42 | 28.09 |
| Bra029900.1-P | Field mustard | cytosol | 26.42 | 28.09 |
| KRH57200 | Soybean | plastid | 25.47 | 28.03 |
| AT5G63350.1 | Thale cress | nucleus | 26.42 | 27.81 |
| Bra038625.1-P | Field mustard | cytosol | 25.79 | 27.8 |
| AT3G48510.1 | Thale cress | cytosol | 25.47 | 27.55 |
| KRH03914 | Soybean | plastid | 24.84 | 27.24 |
| KRH54218 | Soybean | plastid | 21.07 | 27.24 |
| Bra038626.1-P | Field mustard | plastid | 22.64 | 26.87 |
| CDY45734 | Canola | nucleus | 24.21 | 26.19 |
| Solyc03g111100.1.1 | Tomato | nucleus | 25.47 | 26.13 |
| KRH57635 | Soybean | plastid | 24.84 | 25.73 |
| Bra025261.1-P | Field mustard | cytosol | 22.64 | 25.62 |
| PGSC0003DMT400039289 | Potato | nucleus | 24.53 | 25.24 |
| CDY34167 | Canola | cytosol | 21.7 | 24.91 |
| Bra032992.1-P | Field mustard | cytosol | 21.7 | 24.91 |
| CDY13694 | Canola | cytosol | 22.01 | 24.82 |
| CDX83671 | Canola | cytosol | 22.01 | 24.82 |
| VIT_14s0171g00360.t01 | Wine grape | nucleus | 21.38 | 24.29 |
| Bra022512.1-P | Field mustard | nucleus | 21.38 | 24.29 |
| CDY58582 | Canola | cytosol | 21.07 | 23.84 |
| KRG94328 | Soybean | cytosol | 22.96 | 23.62 |
| Solyc02g068030.1.1 | Tomato | cytosol | 20.75 | 23.57 |
| AT3G27250.1 | Thale cress | cytosol | 20.44 | 23.05 |
| AT5G50360.1 | Thale cress | nucleus | 20.75 | 22.68 |
| AT5G40800.1 | Thale cress | cytosol | 19.18 | 22.43 |
| Bra025545.1-P | Field mustard | cytosol, plastid | 19.5 | 22.38 |
| CDY36383 | Canola | cytosol, plastid | 19.5 | 22.38 |
| PGSC0003DMT400062383 | Potato | cytosol | 10.06 | 22.38 |
| CDY37923 | Canola | nucleus | 17.92 | 22.09 |
| Bra019549.1-P | Field mustard | nucleus | 17.92 | 22.09 |
| CDY52703 | Canola | cytosol, plastid | 19.18 | 22.02 |
| AT5G40790.1 | Thale cress | cytosol | 20.75 | 21.78 |
| Bra025546.1-P | Field mustard | cytosol, nucleus, plastid | 21.07 | 21.61 |
| Solyc02g093890.1.1 | Tomato | cytosol | 18.55 | 21.45 |
| PGSC0003DMT400052105 | Potato | cytosol | 18.87 | 21.28 |
| CDY52704 | Canola | cytosol, nucleus, plastid | 19.81 | 20.32 |
| CDY36382 | Canola | cytosol, nucleus, plastid | 19.5 | 20.13 |
| CDY56888 | Canola | cytosol | 14.15 | 17.51 |
| CDY30747 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.96 | 16.29 |
| CDX91547 | Canola | nucleus | 21.7 | 14.47 |
| CDY16370 | Canola | plastid | 21.7 | 14.23 |
| Bra029231.1-P | Field mustard | nucleus | 23.9 | 10.63 |
Protein Annotations
| EnsemblPlants:Zm00001d023800_P001 | EnsemblPlants:Zm00001d023800_T001 | EnsemblPlantsGene:Zm00001d023800 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF3 | ProteinID:AQK40129.1 |
| ProteinID:AQK40130.1 | SEG:seg | UniParc:UPI000221DA56 | UniProt:K7TJN7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr10:-:22055844..22056800
Molecular Weight (calculated)
32370.5 Da
IEP (calculated)
9.875
GRAVY (calculated)
-0.122
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKGGCCLA PRYAATAAAQ QAGAAWQMGR IMLKFRPIAP KPAAMAPAPA PASAPVTGSA AGAGRGKRKA ACGGGGRRGR KPKKAAKVAM VTAAPAATAA
101: AQDVGDCREH CDKEKSSSSP SSSSSGTSSV DSSPPPRPQQ RQLATLPLMP VTAAEDKAAA CPATVGPELV PSQVATAARP LAPRAMRPAA AAAYLVTVEE
201: VTATWRDGEA PASATGHDEA PAFVSDQWGR VTLWNAAFVR AASADDGDEA AAPVVLGGAL PAWGTCAGFT CRVRARHWSA RRVGSPVVAP CDVWRLDAAG
301: SYLWRLDLQA ALTLGGCL
101: AQDVGDCREH CDKEKSSSSP SSSSSGTSSV DSSPPPRPQQ RQLATLPLMP VTAAEDKAAA CPATVGPELV PSQVATAARP LAPRAMRPAA AAAYLVTVEE
201: VTATWRDGEA PASATGHDEA PAFVSDQWGR VTLWNAAFVR AASADDGDEA AAPVVLGGAL PAWGTCAGFT CRVRARHWSA RRVGSPVVAP CDVWRLDAAG
301: SYLWRLDLQA ALTLGGCL
001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL
Arabidopsis Description
At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.