CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52704	Canola	cytosol, nucleus, plastid	97.08	96.45
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	87.66	87.1
AT5G40790.1	Thale cress	cytosol	51.95	52.81
PGSC0003DMT400003036	Potato	cytosol	10.06	42.47
VIT_14s0171g00360.t01	Wine grape	nucleus	34.42	37.86
KRH57635	Soybean	plastid	32.14	32.25
CDX83671	Canola	cytosol	29.22	31.91
Solyc02g068030.1.1	Tomato	cytosol	28.9	31.79
CDY34167	Canola	cytosol	28.57	31.77
CDY58582	Canola	cytosol	28.9	31.67
CDY13694	Canola	cytosol	28.57	31.21
KRG94328	Soybean	cytosol	31.17	31.07
CDY52703	Canola	cytosol, plastid	27.6	30.69
CDY36383	Canola	cytosol, plastid	27.27	30.32
Solyc02g093890.1.1	Tomato	cytosol	26.95	30.18
CDY53329	Canola	cytosol	28.57	29.43
CDY45734	Canola	nucleus	27.92	29.25
PGSC0003DMT400052105	Potato	cytosol	26.62	29.08
CDX68466	Canola	cytosol	28.25	29.0
CDY37923	Canola	nucleus	23.05	27.52
GSMUA_Achr8P28790_001	Banana	cytosol	25.32	26.9
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	25.65	26.33
GSMUA_Achr3P17030_001	Banana	cytosol	25.0	26.01
TraesCS3B01G247700.1	Wheat	mitochondrion	21.43	22.37
TraesCS3D01G219400.1	Wheat	mitochondrion	21.43	22.0
TraesCS3A01G217400.1	Wheat	mitochondrion	21.1	21.89
CDY56888	Canola	cytosol	17.86	21.4
EES15909	Sorghum	peroxisome	21.75	20.06
Zm00001d023799_P001	Maize	mitochondrion	20.13	19.5
Zm00001d023800_P001	Maize	mitochondrion	20.13	19.5
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	27.6	18.97
CDX91547	Canola	nucleus	29.22	18.87
Os12t0242500-01	Rice	extracellular	20.13	18.84
CDY16370	Canola	plastid	27.27	17.32

Protein Annotations

EnsemblPlants:CDY36382	EnsemblPlantsGene:GSBRNA2T00060432001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY36382	ProteinID:CDY36382.1
SEG:seg	UniParc:UPI0004EF0DB3	UniProt:A0A078HF11	MapMan:35.2	:	:

Description

BnaC04g32900DBnaC04g32900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF11]

Coordinates

chrLK032374:-:273706..274632

Molecular Weight (calculated)

34754.0 Da

IEP (calculated)

7.595

GRAVY (calculated)

-0.729

Length

308 amino acids

Sequence
(BLAST)

001: MKTDYGKQRE ASACDDVTDQ DKTVVSRIMQ RFRPIAPKPP VGESSDNTKS CRFLRRNRRS KRKYVRVRNK NISSGSSNNN KDMRCSNKKA CGDGEKIKTD
101: LDEEIGGEDK SDIVTLQLLP DKDKDHQAGK DNTDPSAMDP RTSLNISSSL DRTVVESSLT VECVNNTCTE LGGYHKLQLS RTNEGEEIVM RMLYFDTCPW
201: LVSDGSNRVY WINRAYRNML GDPNAEVTIK VWLVVATDLM EEMSCMVESY GAVTCRVGVR YDTSTWRNEK SHSESEVKMT VPCDVWRMGS SGGLAWRLDV
301: ESALTLGR

Best Arabidopsis Sequence Match ( AT5G40790.1 )
(BLAST)

001: MHGNGKQCQA SICDGATDQD KTVISKIMQR FRPIAPKPAV GESSDDTNSD RFLGRNRRSK RKYVRVRDKK NSSGSNNKKD ITGKKNGCDR GNIKTDLDKK
101: IDGDDRTDIV TLQLLPEKDR DIGNNGDKAG EFCSDLSDMD PKKSLYNSII GLSSSFDRKV VESWLTVECV SDTCTDLGWY HILEQLGRMD QAEERVMRML
201: EVDTCPWLVS DGSNRVCWVN RAYRRMMGAP DVDVIRVWLV VAMDLMEEIA CMVELYGAVT CRVRVRYEPS TWRKMTVPCD VWRIRSGGFA WRLDVESALR
301: LGM

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.