CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39957
CDY53218

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	CDY39957	AT1G80650.1	21798944
AT5G63350.1	CDY53218	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45734	Canola	nucleus	53.35	81.29
AT5G63350.1	Thale cress	nucleus	44.64	66.23
CDY53329	Canola	cytosol	36.83	55.18
CDX68466	Canola	cytosol	36.61	54.67
CDY37923	Canola	nucleus	30.36	52.71
KRH63730	Soybean	plastid	24.11	43.55
KRH54218	Soybean	plastid	23.44	42.68
KRH57200	Soybean	plastid	26.79	41.52
KRH03914	Soybean	plastid	26.79	41.38
Solyc03g111100.1.1	Tomato	nucleus	28.12	40.65
PGSC0003DMT400062383	Potato	cytosol	12.72	39.86
PGSC0003DMT400039289	Potato	nucleus	27.46	39.81
Bra029231.1-P	Field mustard	nucleus	62.5	39.16
CDY56888	Canola	cytosol	21.43	37.35
CDY58582	Canola	cytosol	21.21	33.81
CDY34167	Canola	cytosol	20.31	32.85
CDY52703	Canola	cytosol, plastid	20.09	32.49
CDY36383	Canola	cytosol, plastid	19.87	32.13
CDX83671	Canola	cytosol	20.09	31.91
CDY13694	Canola	cytosol	20.09	31.91
GSMUA_Achr3P17030_001	Banana	cytosol	20.98	31.76
GSMUA_Achr8P28790_001	Banana	cytosol	20.09	31.03
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	20.54	30.67
CDX91547	Canola	nucleus	32.14	30.19
CDY16370	Canola	plastid	32.37	29.9
CDY36382	Canola	cytosol, nucleus, plastid	18.97	27.6
CDY52704	Canola	cytosol, nucleus, plastid	18.97	27.42
TraesCS3D01G219400.1	Wheat	mitochondrion	17.86	26.67
TraesCS3B01G247700.1	Wheat	mitochondrion	17.19	26.1
TraesCS3A01G217400.1	Wheat	mitochondrion	16.96	25.59
Os12t0242500-01	Rice	extracellular	16.96	23.1
EES15909	Sorghum	peroxisome	17.19	23.05
Zm00001d023799_P001	Maize	mitochondrion	16.29	22.96
Zm00001d023800_P001	Maize	mitochondrion	16.29	22.96

Protein Annotations

EnsemblPlants:CDY30747	EnsemblPlantsGene:GSBRNA2T00046103001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDY30747	ProteinID:CDY30747.1
SEG:seg	UniParc:UPI0004EE3218	UniProt:A0A078GZT8	MapMan:35.2	:	:

Description

BnaA02g33690DBnaA02g33690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZT8]

Coordinates

chrLK032258:-:482654..485391

Molecular Weight (calculated)

50622.8 Da

IEP (calculated)

10.051

GRAVY (calculated)

-0.495

Length

448 amino acids

Sequence
(BLAST)

001: MDVRGGCCIA RYGGYGGHYS LSKAERIMLR FRPIAPKPSN DGGGGSPGAG KYCSSTTSGG SSDVSSNTKR GKRKYHKESS GVNSRRCNKR KRPNTRTAVT
101: LSLLPDLNVS PVEKQRQNGP LWLSFSGGDH EMLTPYKTAE ISQRTVVVSS CVTVERVTDA WTNGYGLGKT DDEKKLNLAR EACPGFISDG VGRVTWTNKA
201: YRKMAKEDIN IPVEDGAPGM SYDNFHVIVR LVMKERPMLT YPAFTCSVRL QYTCQDRERG SVTVPCDVWR MDDGGFAWKL DVKTAFSLHQ IIYLIVCHSK
301: YNILYDHKPI PKITDHKIKS KYHKIYSTLC ISPKFNFKLL YPITKLTSKF IRGLKKDAET SRICSKEKML ETSGQSQQEH VEVGKVIDYV HIYSPFSGSQ
401: SIHWLARFTY HRFLSAKRRR SDGKYFVSDL NEVVLVSKYL FICRTTPF

Best Arabidopsis Sequence Match ( AT5G63350.1 )
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.