CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032992.1-P	Field mustard	cytosol	99.28	99.28
CDY58582	Canola	cytosol	87.0	85.77
CDY13694	Canola	cytosol	81.23	79.79
CDX83671	Canola	cytosol	79.42	78.01
AT3G27250.1	Thale cress	cytosol	75.09	73.76
CDY36383	Canola	cytosol, plastid	57.04	57.04
CDY52703	Canola	cytosol, plastid	56.32	56.32
PGSC0003DMT400003036	Potato	cytosol	13.0	49.32
VIT_14s0171g00360.t01	Wine grape	nucleus	39.71	39.29
KRH57635	Soybean	plastid	42.96	38.76
KRG94328	Soybean	cytosol	42.6	38.19
Solyc02g093890.1.1	Tomato	cytosol	36.46	36.73
Solyc02g068030.1.1	Tomato	cytosol	35.38	35.0
PGSC0003DMT400052105	Potato	cytosol	35.02	34.4
CDY53329	Canola	cytosol	36.46	33.78
CDY45734	Canola	nucleus	34.66	32.65
CDX68466	Canola	cytosol	35.02	32.33
CDY37923	Canola	nucleus	27.44	29.46
CDY52704	Canola	cytosol, nucleus, plastid	32.85	29.35
CDY36382	Canola	cytosol, nucleus, plastid	31.77	28.57
GSMUA_Achr8P28790_001	Banana	cytosol	29.6	28.28
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	30.32	28.0
GSMUA_Achr3P17030_001	Banana	cytosol	29.24	27.36
TraesCS3D01G219400.1	Wheat	mitochondrion	25.27	23.33
TraesCS3B01G247700.1	Wheat	mitochondrion	23.83	22.37
TraesCS3A01G217400.1	Wheat	mitochondrion	23.83	22.22
CDY56888	Canola	cytosol	20.58	22.18
Zm00001d023800_P001	Maize	mitochondrion	24.91	21.7
Zm00001d023799_P001	Maize	mitochondrion	24.91	21.7
EES15909	Sorghum	peroxisome	25.63	21.26
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	32.85	20.31
Os12t0242500-01	Rice	extracellular	23.83	20.06
CDX91547	Canola	nucleus	33.21	19.29
CDY16370	Canola	plastid	32.13	18.35

Protein Annotations

EnsemblPlants:CDY34167	EnsemblPlantsGene:GSBRNA2T00056145001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY34167	ProteinID:CDY34167.1
UniParc:UPI0004EF1273	UniProt:A0A078H965	MapMan:35.2	:	:	:

Description

BnaA02g28730DBnaA02g28730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H965]

Coordinates

chrLK032330:-:116897..117730

Molecular Weight (calculated)

31205.7 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.601

Length

277 amino acids

Sequence
(BLAST)

001: MNQDEWVGTL RYAGKAQDKV SLDTLMLRYR PIAPKPTTGQ PCDAGDNNKN NSYGMNKRTK RKYVRVSKNN NTTCRGKNRS DLSDDGEQTG VVTLQLMPEK
101: SDLTSDYTPL DPMVKTITGE ETRETNTWTM FNGGGTAEVE TWVTVKSVTG VCDGSSSFHG VKCTDAEMVD KLSKDTCPAF VSDASNRVVW VNEAYRRNIS
201: GEDPSSLSLP DVTVWLVMEE STVAMYCNYR AFTCRVRMQY TWQETKYTKT VPCDVWKMEF GGFAWRLDTT AALTLWL

Best Arabidopsis Sequence Match ( AT3G27250.1 )
(BLAST)

001: MDQDDWLGTL RYAGKAQDKV SVDALMLRYR PIAPKPTTGQ PCGVADNNNN SSYGMSKRTK RKYVRVSKNN KGTCRGKSRS DLSDDREQTD VVTLQLLPEK
101: SDISGEYSPL DQDSLDPSVK SIIGEETQET NTWGMFNGSV TAEMETWVTV ESVTSVCEGS LSSHAVGITD VEIVDNLGKD TCPAFVSDGS NRVVWVNEAY
201: RRNVSGDDST ASVSPEVVVW LVAEEATAAM HCNYQAFTCR VRMQYTWKET KYTKTVPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

At3g27250 [Source:UniProtKB/TrEMBL;Acc:Q9LK28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.