Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63350.1 | CDY39957 | AT1G80650.1 | 21798944 |
| AT5G63350.1 | CDY53218 | AT1G80650.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G63350.1 | Thale cress | nucleus | 76.87 | 74.83 |
| CDY53329 | Canola | cytosol | 61.22 | 60.2 |
| CDX68466 | Canola | cytosol | 59.86 | 58.67 |
| CDY37923 | Canola | nucleus | 49.66 | 56.59 |
| CDY30747 | Canola | cytosol, mitochondrion, nucleus, plastid | 81.29 | 53.35 |
| KRH63730 | Soybean | plastid | 38.78 | 45.97 |
| KRH54218 | Soybean | plastid | 37.76 | 45.12 |
| KRH57200 | Soybean | plastid | 43.2 | 43.94 |
| KRH03914 | Soybean | plastid | 43.2 | 43.79 |
| CDY56888 | Canola | cytosol | 36.73 | 42.02 |
| Solyc03g111100.1.1 | Tomato | nucleus | 43.2 | 40.97 |
| PGSC0003DMT400039289 | Potato | nucleus | 42.18 | 40.13 |
| PGSC0003DMT400062383 | Potato | cytosol | 19.05 | 39.16 |
| CDY58582 | Canola | cytosol | 34.35 | 35.94 |
| CDX83671 | Canola | cytosol | 33.33 | 34.75 |
| CDY34167 | Canola | cytosol | 32.65 | 34.66 |
| CDY13694 | Canola | cytosol | 32.99 | 34.4 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 32.99 | 32.77 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 31.63 | 32.07 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 32.65 | 32.0 |
| CDY52703 | Canola | cytosol, plastid | 29.93 | 31.77 |
| CDY36383 | Canola | cytosol, plastid | 29.59 | 31.41 |
| CDY36382 | Canola | cytosol, nucleus, plastid | 29.25 | 27.92 |
| CDY52704 | Canola | cytosol, nucleus, plastid | 29.25 | 27.74 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 27.55 | 27.46 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 27.89 | 27.33 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 27.21 | 26.94 |
| CDX91547 | Canola | nucleus | 42.52 | 26.21 |
| CDY16370 | Canola | plastid | 43.2 | 26.19 |
| EES15909 | Sorghum | peroxisome | 28.57 | 25.15 |
| Zm00001d023799_P001 | Maize | mitochondrion | 26.19 | 24.21 |
| Zm00001d023800_P001 | Maize | mitochondrion | 26.19 | 24.21 |
| Os12t0242500-01 | Rice | extracellular | 26.19 | 23.4 |
Protein Annotations
| EnsemblPlants:CDY45734 | EnsemblPlantsGene:GSBRNA2T00082647001 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF3 | ProteinID:CDY45734 | ProteinID:CDY45734.1 |
| SEG:seg | UniParc:UPI0004EBACB2 | UniProt:A0A078I8K0 | MapMan:35.2 | : | : |
Description
BnaC02g42480DBnaC02g42480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8K0]
Coordinates
chrLK032635:+:19347..20451
Molecular Weight (calculated)
32503.8 Da
IEP (calculated)
9.799
GRAVY (calculated)
-0.593
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVRGGCRIA RYGGYGGRYG LSKADRIMLR FRPIAPKPSS DGGRLSPGAG KYGSTTTSGG SSDLSGNTKG GKRKYHKESS GVNSRRCNKR KRPDTTTTVT
101: LSLLPETRVF QDLNVPPVEK KTQNGPLWLS FSGGDGGMPT LYKTAEISQR TVVVSSCVTV ERVTDAWNDG YGLGKTNEER KMNLARDTCP GFISDGVGRV
201: TWTNEAYRKM AKEDINIPVE DDAPEISYDN FHVIVRLVMK ERPMLTYPAF TCRVRLQYTC QDRERGSVTV PCDVWRMDGG GFAWKLDVKT ALCL
101: LSLLPETRVF QDLNVPPVEK KTQNGPLWLS FSGGDGGMPT LYKTAEISQR TVVVSSCVTV ERVTDAWNDG YGLGKTNEER KMNLARDTCP GFISDGVGRV
201: TWTNEAYRKM AKEDINIPVE DDAPEISYDN FHVIVRLVMK ERPMLTYPAF TCRVRLQYTC QDRERGSVTV PCDVWRMDGG GFAWKLDVKT ALCL
001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.