Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038625.1-P | Field mustard | cytosol | 75.83 | 77.63 |
| CDY45734 | Canola | nucleus | 74.83 | 76.87 |
| Bra038626.1-P | Field mustard | plastid | 66.89 | 75.37 |
| AT3G48510.1 | Thale cress | cytosol | 61.92 | 63.61 |
| AT5G50360.1 | Thale cress | nucleus | 46.03 | 47.77 |
| KRH63730 | Soybean | plastid | 38.74 | 47.18 |
| KRH57200 | Soybean | plastid | 44.04 | 46.02 |
| KRH54218 | Soybean | plastid | 37.42 | 45.94 |
| KRH03914 | Soybean | plastid | 43.71 | 45.52 |
| CDY30747 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.23 | 44.64 |
| Solyc03g111100.1.1 | Tomato | nucleus | 45.7 | 44.52 |
| PGSC0003DMT400039289 | Potato | nucleus | 43.05 | 42.07 |
| PGSC0003DMT400062383 | Potato | cytosol | 18.21 | 38.46 |
| AT3G27250.1 | Thale cress | cytosol | 33.44 | 35.82 |
| GSMUA_Achr3P17030_001 | Banana | cytosol | 34.11 | 34.8 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 33.44 | 33.67 |
| GSMUA_Achr8P28790_001 | Banana | cytosol | 32.12 | 33.45 |
| AT5G40800.1 | Thale cress | cytosol | 28.48 | 31.62 |
| AT5G40790.1 | Thale cress | cytosol | 30.46 | 30.36 |
| TraesCS3B01G247700.1 | Wheat | mitochondrion | 29.14 | 29.83 |
| TraesCS3D01G219400.1 | Wheat | mitochondrion | 29.47 | 29.67 |
| TraesCS3A01G217400.1 | Wheat | mitochondrion | 28.48 | 28.96 |
| Bra029231.1-P | Field mustard | nucleus | 66.23 | 27.97 |
| EES15909 | Sorghum | peroxisome | 30.46 | 27.54 |
| Zm00001d023799_P001 | Maize | mitochondrion | 27.81 | 26.42 |
| Zm00001d023800_P001 | Maize | mitochondrion | 27.81 | 26.42 |
| Os12t0242500-01 | Rice | extracellular | 28.48 | 26.14 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836455 | ProteinID:AED97736.1 | ArrayExpress:AT5G63350 | EnsemblPlantsGene:AT5G63350 | RefSeq:AT5G63350 |
| TAIR:AT5G63350 | RefSeq:AT5G63350-TAIR-G | EnsemblPlants:AT5G63350.1 | TAIR:AT5G63350.1 | ProteinID:BAB10739.1 | EMBL:BT002821 |
| EMBL:BT004383 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | RefSeq:NP_201140.1 |
| PO:PO:0000293 | PANTHER:PTHR33595 | PANTHER:PTHR33595:SF3 | UniProt:Q9FGW7 | UniParc:UPI000000BDDD | SEG:seg |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
Coordinates
chr5:-:25379931..25381317
Molecular Weight (calculated)
33216.6 Da
IEP (calculated)
9.239
GRAVY (calculated)
-0.544
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.