Factsheet for Bra038625.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008448.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	Bra008448.1-P	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038626.1-P	Field mustard	plastid	90.85	100.0
AT5G63350.1	Thale cress	nucleus	77.63	75.83
Bra029900.1-P	Field mustard	cytosol	62.37	61.54
Bra019549.1-P	Field mustard	nucleus	49.49	56.59
KRH03914	Soybean	plastid	47.12	47.93
Bra022512.1-P	Field mustard	nucleus	45.42	47.86
KRH54218	Soybean	plastid	39.32	47.15
KRH57200	Soybean	plastid	46.1	47.06
KRH63730	Soybean	plastid	38.98	46.37
Solyc03g111100.1.1	Tomato	nucleus	48.47	46.13
PGSC0003DMT400039289	Potato	nucleus	45.76	43.69
PGSC0003DMT400062383	Potato	cytosol	20.34	41.96
Bra032992.1-P	Field mustard	cytosol	33.22	35.38
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	35.25	34.67
Bra025261.1-P	Field mustard	cytosol	32.88	34.52
GSMUA_Achr3P17030_001	Banana	cytosol	34.58	34.46
Bra025545.1-P	Field mustard	cytosol, plastid	31.86	33.94
GSMUA_Achr8P28790_001	Banana	cytosol	33.22	33.79
Bra029231.1-P	Field mustard	nucleus	73.9	30.49
TraesCS3D01G219400.1	Wheat	mitochondrion	28.14	27.67
TraesCS3B01G247700.1	Wheat	mitochondrion	27.46	27.46
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	28.81	27.42
TraesCS3A01G217400.1	Wheat	mitochondrion	27.12	26.94
EES15909	Sorghum	peroxisome	29.83	26.35
Zm00001d023799_P001	Maize	mitochondrion	27.8	25.79
Zm00001d023800_P001	Maize	mitochondrion	27.8	25.79
Os12t0242500-01	Rice	extracellular	26.78	24.01

Protein Annotations

EnsemblPlants:Bra038625.1	EnsemblPlants:Bra038625.1-P	EnsemblPlantsGene:Bra038625	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	SEG:seg
UniParc:UPI000253F255	UniProt:M4FC09	MapMan:35.2	:	:	:

Description

AT5G63350 (E=5e-094) | unknown protein

Coordinates

chrA06:-:14240762..14241649

Molecular Weight (calculated)

32064.3 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.543

Length

295 amino acids

Sequence
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGGTSPGAG KYGSTTTSGG SSDVSCKPGR GKRKYPKDSS GGNSRRCNRR KVSDRGVAAA
101: TAAVTLSLLP ETPDKRAFPD LNVSPVENDQ KRNGPLWLSF SGGDHGMLTP YKSAEISRRA VVVSSCVTVE RVTDAWINGQ GLGRTDEEKK INLARDTCPG
201: FISDGVGRVT WTNEAYRKMA KEGAPGMSYD NFHVNVRLVM KERPMLTYPA FTCRVRLQFT CQDRERRSVT VPCDVWRMDG GGFAWKLDVK AALCL

Best Arabidopsis Sequence Match ( AT5G63350.1 )
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.