Factsheet for Bra038626.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008448.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63350.1	Bra008448.1-P	AT1G80650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038625.1-P	Field mustard	cytosol	100.0	90.85
AT5G63350.1	Thale cress	nucleus	75.37	66.89
Bra019549.1-P	Field mustard	nucleus	54.1	56.2
Bra029900.1-P	Field mustard	cytosol	60.82	54.52
KRH54218	Soybean	plastid	42.16	45.94
KRH63730	Soybean	plastid	41.79	45.16
KRH03914	Soybean	plastid	46.27	42.76
KRH57200	Soybean	plastid	45.52	42.21
Bra022512.1-P	Field mustard	nucleus	43.28	41.43
PGSC0003DMT400062383	Potato	cytosol	22.01	41.26
Solyc03g111100.1.1	Tomato	nucleus	46.27	40.0
PGSC0003DMT400039289	Potato	nucleus	43.28	37.54
Bra032992.1-P	Field mustard	cytosol	34.7	33.57
Bra025261.1-P	Field mustard	cytosol	34.7	33.1
Bra025545.1-P	Field mustard	cytosol, plastid	33.58	32.49
GSMUA_Achr3P17030_001	Banana	cytosol	33.96	30.74
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	33.58	30.0
GSMUA_Achr8P28790_001	Banana	cytosol	32.46	30.0
Bra029231.1-P	Field mustard	nucleus	71.64	26.85
Bra025546.1-P	Field mustard	cytosol, nucleus, plastid	29.48	25.48
TraesCS3B01G247700.1	Wheat	mitochondrion	27.24	24.75
TraesCS3D01G219400.1	Wheat	mitochondrion	27.61	24.67
TraesCS3A01G217400.1	Wheat	mitochondrion	26.49	23.91
EES15909	Sorghum	peroxisome	28.73	23.05
Zm00001d023799_P001	Maize	mitochondrion	26.87	22.64
Zm00001d023800_P001	Maize	mitochondrion	26.87	22.64
Os12t0242500-01	Rice	extracellular	25.0	20.36

Protein Annotations

EnsemblPlants:Bra038626.1	EnsemblPlants:Bra038626.1-P	EnsemblPlantsGene:Bra038626	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	SEG:seg
UniParc:UPI000253F256	UniProt:M4FC10	MapMan:35.2	:	:	:

Description

AT5G63350 (E=2e-090) | unknown protein

Coordinates

chrA06:-:14240762..14241568

Molecular Weight (calculated)

29228.8 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.547

Length

268 amino acids

Sequence
(BLAST)

001: MLRFRPIAPK PASDGGGTSP GAGKYGSTTT SGGSSDVSCK PGRGKRKYPK DSSGGNSRRC NRRKVSDRGV AAATAAVTLS LLPETPDKRA FPDLNVSPVE
101: NDQKRNGPLW LSFSGGDHGM LTPYKSAEIS RRAVVVSSCV TVERVTDAWI NGQGLGRTDE EKKINLARDT CPGFISDGVG RVTWTNEAYR KMAKEGAPGM
201: SYDNFHVNVR LVMKERPMLT YPAFTCRVRL QFTCQDRERR SVTVPCDVWR MDGGGFAWKL DVKAALCL

Best Arabidopsis Sequence Match ( AT5G63350.1 )
(BLAST)

001: MDGRGGCCIA RYGGYGGRYG LSKADRIMLR FRPIAPKPAS DGGSVSLTGK SGSTTTTSGG SSDLSGKSGR GKRKYQKDCS GGNSRRCNKK KRDLSGDTAT
101: TTAVTLSLLP ETPEKRVFPD LNAFPVEKQK RNGPLWLSFN GGGEILTPYK TAEISRRTVV VSSCVTVERV TDAWIDGYGL GETNQERKMN LVEDTCPGFI
201: SDGVGRVTWT NEAYKKMARE DINIPMEEGV PEDISYDNFH VNVRLVMKER PMLTYPAFTC RVRLQYTCQD RERGSVTVPC DVWRMDGGGF AWRLDVKAAL
301: CL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.