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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37923 Canola nucleus 100.0 100.0
Bra029900.1-P Field mustard cytosol 67.05 57.86
AT3G48510.1 Thale cress cytosol 65.89 57.82
Bra038626.1-P Field mustard plastid 56.2 54.1
Bra038625.1-P Field mustard cytosol 56.59 49.49
KRH63730 Soybean plastid 35.66 37.1
KRH54218 Soybean plastid 34.88 36.59
Bra022512.1-P Field mustard nucleus 38.76 35.71
PGSC0003DMT400062383 Potato cytosol 19.77 35.66
KRH57200 Soybean plastid 37.6 33.56
KRH03914 Soybean plastid 37.6 33.45
Solyc03g111100.1.1 Tomato nucleus 34.88 29.03
PGSC0003DMT400039289 Potato nucleus 34.11 28.48
Bra025261.1-P Field mustard cytosol 30.23 27.76
Bra032992.1-P Field mustard cytosol 29.46 27.44
Bra025545.1-P Field mustard cytosol, plastid 29.07 27.08
GSMUA_Achr3P17030_001 Banana cytosol 29.07 25.34
GSMUA_Achr8P28790_001 Banana cytosol 28.29 25.17
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 27.91 24.0
Bra025546.1-P Field mustard cytosol, nucleus, plastid 26.36 21.94
TraesCS3B01G247700.1 Wheat mitochondrion 22.87 20.0
TraesCS3D01G219400.1 Wheat mitochondrion 23.26 20.0
TraesCS3A01G217400.1 Wheat mitochondrion 22.87 19.87
Bra029231.1-P Field mustard nucleus 53.49 19.3
Os12t0242500-01 Rice extracellular 22.87 17.93
Zm00001d023799_P001 Maize mitochondrion 22.09 17.92
Zm00001d023800_P001 Maize mitochondrion 22.09 17.92
EES15909 Sorghum peroxisome 22.48 17.37
Protein Annotations
EnsemblPlants:Bra019549.1EnsemblPlants:Bra019549.1-PEnsemblPlantsGene:Bra019549PANTHER:PTHR33595PANTHER:PTHR33595:SF3SEG:seg
UniParc:UPI000253EFFDUniProt:M4DSQ6MapMan:35.2:::
Description
AT3G48510 (E=9e-096) | unknown protein
Coordinates
chrA06:+:12318375..12319151
Molecular Weight (calculated)
28796.4 Da
IEP (calculated)
9.860
GRAVY (calculated)
-0.636
Length
258 amino acids
Sequence
(BLAST)
001: MLRFRPIAPK PTSDYGCGGK PVSSGESFSG SSNVSFRGKR KCQQTENGGS ARRCTRRKKL EKTVAHGGEA KVTLSLLPER PGQSAFTDMK LSVASAEKQK
101: RQGPFWLSLS DGGGMITQTY QSVEVMGRTV VISSCMTVER VTDAWNDGYG LGRSDEERKM NLVRDTCPGF ISDGSGRVTW TNEAYRKMAR DNIRVKEGAP
201: ENKSGESFHV IVRLVMRERP MLTYTAFTCR MTLQFTCQDR ERCSVTVPCD VWRMDDGR
Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)
001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL
Arabidopsis Description
At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.