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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52704 Canola cytosol, nucleus, plastid 89.68 89.68
CDY36382 Canola cytosol, nucleus, plastid 87.1 87.66
AT5G40790.1 Thale cress cytosol 52.9 54.13
PGSC0003DMT400003036 Potato cytosol 9.68 41.1
VIT_14s0171g00360.t01 Wine grape nucleus 34.19 37.86
KRH57635 Soybean plastid 32.58 32.9
Solyc02g068030.1.1 Tomato cytosol 29.03 32.14
Bra032992.1-P Field mustard cytosol 28.71 32.13
Bra025261.1-P Field mustard cytosol 28.71 31.67
Solyc02g093890.1.1 Tomato cytosol 27.74 31.27
Bra022512.1-P Field mustard nucleus 27.74 30.71
PGSC0003DMT400052105 Potato cytosol 27.74 30.5
KRG94328 Soybean cytosol 30.32 30.42
Bra025545.1-P Field mustard cytosol, plastid 27.1 30.32
Bra038626.1-P Field mustard plastid 25.48 29.48
Bra038625.1-P Field mustard cytosol 27.42 28.81
Bra029900.1-P Field mustard cytosol 27.42 28.43
GSMUA_Achr8P28790_001 Banana cytosol 25.81 27.59
GSMUA_Achr3P17030_001 Banana cytosol 25.48 26.69
Bra019549.1-P Field mustard nucleus 21.94 26.36
GSMUA_AchrUn_... Banana cytosol, nucleus, peroxisome 25.48 26.33
TraesCS3B01G247700.1 Wheat mitochondrion 21.29 22.37
TraesCS3A01G217400.1 Wheat mitochondrion 21.29 22.22
TraesCS3D01G219400.1 Wheat mitochondrion 21.29 22.0
Zm00001d023799_P001 Maize mitochondrion 21.61 21.07
Zm00001d023800_P001 Maize mitochondrion 21.61 21.07
EES15909 Sorghum peroxisome 21.94 20.36
Os12t0242500-01 Rice extracellular 20.0 18.84
Bra029231.1-P Field mustard nucleus 26.13 11.33
Protein Annotations
EnsemblPlants:Bra025546.1EnsemblPlants:Bra025546.1-PEnsemblPlantsGene:Bra025546PANTHER:PTHR33595PANTHER:PTHR33595:SF4SEG:seg
UniParc:UPI0002544EE9UniProt:M4E9U0MapMan:35.2:::
Description
AT5G40790 (E=5e-095) | unknown protein
Coordinates
chrA04:-:7987857..7988789
Molecular Weight (calculated)
35389.7 Da
IEP (calculated)
5.560
GRAVY (calculated)
-0.738
Length
310 amino acids
Sequence
(BLAST)
001: MKTDYGKQRE ASACDDVTDQ DKTVVSRIMQ RFRPIAPKPP VGESSDDTKS CRFLRRNRRF KRKYVRVQNK NISSDRSNNN KDMICSNKKA CGDGEKIKTD
101: LDEEIGGEDK SDIVTLQLLP DKDKDHQADK DNTDPSDMDP ITSLNISSSL DRTVVESWLT VECVNNTCTE LGGYHKLQLS RMNEGEEIVM RMLYFDTCPW
201: LVSDGSNRVY WINRAYRNML GDPNAEVTIK VWLGVAPDLM EEMSCMVESY GAVTCRVRVR YDTSTWRNEK SHSESEVKMT VPCDVWRMGS SGGLAWRLDV
301: ESALTLGRYN
Best Arabidopsis Sequence Match ( AT5G40790.1 )
(BLAST)
001: MHGNGKQCQA SICDGATDQD KTVISKIMQR FRPIAPKPAV GESSDDTNSD RFLGRNRRSK RKYVRVRDKK NSSGSNNKKD ITGKKNGCDR GNIKTDLDKK
101: IDGDDRTDIV TLQLLPEKDR DIGNNGDKAG EFCSDLSDMD PKKSLYNSII GLSSSFDRKV VESWLTVECV SDTCTDLGWY HILEQLGRMD QAEERVMRML
201: EVDTCPWLVS DGSNRVCWVN RAYRRMMGAP DVDVIRVWLV VAMDLMEEIA CMVELYGAVT CRVRVRYEPS TWRKMTVPCD VWRIRSGGFA WRLDVESALR
301: LGM
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.