CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029900.1-P	Field mustard	cytosol	100.0	100.0
CDX68466	Canola	cytosol	88.96	88.67
AT3G48510.1	Thale cress	cytosol	68.23	69.39
CDY37923	Canola	nucleus	57.86	67.05
CDY45734	Canola	nucleus	60.2	61.22
CDY56888	Canola	cytosol	39.13	45.53
KRH54218	Soybean	plastid	36.12	43.9
KRH57200	Soybean	plastid	42.14	43.6
KRH03914	Soybean	plastid	42.14	43.45
KRH63730	Soybean	plastid	35.12	42.34
Solyc03g111100.1.1	Tomato	nucleus	42.81	41.29
PGSC0003DMT400039289	Potato	nucleus	41.81	40.45
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	55.18	36.83
CDY34167	Canola	cytosol	33.78	36.46
CDX83671	Canola	cytosol	34.11	36.17
CDY13694	Canola	cytosol	33.78	35.82
CDY58582	Canola	cytosol	33.44	35.59
PGSC0003DMT400062383	Potato	cytosol	16.72	34.97
CDY52703	Canola	cytosol, plastid	31.44	33.94
CDY36383	Canola	cytosol, plastid	31.1	33.57
GSMUA_Achr3P17030_001	Banana	cytosol	31.77	32.09
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	31.1	31.0
GSMUA_Achr8P28790_001	Banana	cytosol	29.77	30.69
TraesCS3B01G247700.1	Wheat	mitochondrion	29.1	29.49
TraesCS3D01G219400.1	Wheat	mitochondrion	29.43	29.33
TraesCS3A01G217400.1	Wheat	mitochondrion	29.1	29.29
CDY36382	Canola	cytosol, nucleus, plastid	29.43	28.57
CDY52704	Canola	cytosol, nucleus, plastid	29.1	28.06
CDY16370	Canola	plastid	44.48	27.42
CDX91547	Canola	nucleus	43.48	27.25
Zm00001d023800_P001	Maize	mitochondrion	28.09	26.42
Zm00001d023799_P001	Maize	mitochondrion	28.09	26.42
Os12t0242500-01	Rice	extracellular	28.43	25.84
EES15909	Sorghum	peroxisome	27.76	24.85

Protein Annotations

EnsemblPlants:CDY53329	EnsemblPlantsGene:GSBRNA2T00010451001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF3	ProteinID:CDY53329	ProteinID:CDY53329.1
SEG:seg	UniParc:UPI0002543F48	UniProt:A0A078IV89	MapMan:35.2	:	:

Description

BnaAnng12320DBnaAnng12320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV89]

Coordinates

chrLK033188:+:34703..35748

Molecular Weight (calculated)

33003.1 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.640

Length

299 amino acids

Sequence
(BLAST)

001: MDSRGGCCIA RYAGGGGTYH YDLSKADRIM LRFRPIAPKP TSDGSGGKPV SSGESGGGSS DVSFKGGRRK RKCQQKENSG NARRCTPRRR SDKSVGHGGH
101: TKVTLSLLPE TPDEGDFTDL KVSVPSVEKQ HGPFWLSFSD GGGMFTPAYQ TDVMWRKVVI SSCMTVERVS DAWMDGYGLG RSDEERKMNL VRDTCPGFIS
201: DGSGRVTWTN DAYRKMARDN IPEEDGSPEN MSGDSFQVIV RLVMKDRPML TYPAFTCRVK LQFTCQDRER SSVTVPCDAW KMDNGGFAWR LDVKAALCL

Best Arabidopsis Sequence Match ( AT3G48510.1 )
(BLAST)

001: MDGRGGCCIA RYAIGSGPYD LSKADRIMLR FRPIAPKPAS PGGVNPVSSG DSGGGSSDVS FRSASRRKRK CHQLKENGGN AKRCTRRKTS DKPVVHGSAN
101: AVTLSLLPEK PIDLKAAVEK QKRQGPLWLS FKDGGGMLTP AYQTPEIVQR TVVISSCMTV ERVTDAWIDG YGLGRSDEER KMNLVRDTCP GFISDGSGRV
201: TWTNDAYRKM ARDIIPVEEG APEITSGDSF HVIVRLVMRE RPMLTSPGFT CRMKLQYTCQ NRERGSVTVP CDVWRMDVGG GFAWRLDVKA ALCL

Arabidopsis Description

At3g48510 [Source:UniProtKB/TrEMBL;Acc:Q9SMP6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.