CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025545.1-P	Field mustard	cytosol, plastid	98.92	98.92
CDY36383	Canola	cytosol, plastid	97.47	97.47
AT5G40800.1	Thale cress	cytosol	79.06	80.51
CDY13694	Canola	cytosol	59.57	58.51
CDX83671	Canola	cytosol	58.48	57.45
CDY34167	Canola	cytosol	56.32	56.32
CDY58582	Canola	cytosol	56.32	55.52
PGSC0003DMT400003036	Potato	cytosol	12.27	46.58
VIT_14s0171g00360.t01	Wine grape	nucleus	37.18	36.79
KRH57635	Soybean	plastid	40.43	36.48
KRG94328	Soybean	cytosol	39.35	35.28
Solyc02g068030.1.1	Tomato	cytosol	33.94	33.57
PGSC0003DMT400052105	Potato	cytosol	33.94	33.33
Solyc02g093890.1.1	Tomato	cytosol	32.13	32.36
CDY53329	Canola	cytosol	33.94	31.44
CDX68466	Canola	cytosol	32.49	30.0
CDY45734	Canola	nucleus	31.77	29.93
CDY37923	Canola	nucleus	27.44	29.46
CDY52704	Canola	cytosol, nucleus, plastid	31.41	28.06
CDY36382	Canola	cytosol, nucleus, plastid	30.69	27.6
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	27.44	25.33
GSMUA_Achr3P17030_001	Banana	cytosol	26.71	25.0
GSMUA_Achr8P28790_001	Banana	cytosol	25.63	24.48
TraesCS3B01G247700.1	Wheat	mitochondrion	23.1	21.69
CDY56888	Canola	cytosol	19.86	21.4
TraesCS3D01G219400.1	Wheat	mitochondrion	23.1	21.33
TraesCS3A01G217400.1	Wheat	mitochondrion	22.02	20.54
CDY30747	Canola	cytosol, mitochondrion, nucleus, plastid	32.49	20.09
CDX91547	Canola	nucleus	33.21	19.29
Zm00001d023799_P001	Maize	mitochondrion	22.02	19.18
Zm00001d023800_P001	Maize	mitochondrion	22.02	19.18
Os12t0242500-01	Rice	extracellular	22.02	18.54
EES15909	Sorghum	peroxisome	22.02	18.26
CDY16370	Canola	plastid	31.41	17.94

Protein Annotations

EnsemblPlants:CDY52703	EnsemblPlantsGene:GSBRNA2T00007620001	PANTHER:PTHR33595	PANTHER:PTHR33595:SF4	ProteinID:CDY52703	ProteinID:CDY52703.1
UniParc:UPI0004EE99A5	UniProt:A0A078IUK9	MapMan:35.2	:	:	:

Description

BnaA04g10620DBnaA04g10620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUK9]

Coordinates

chrLK033119:+:51981..52851

Molecular Weight (calculated)

31060.6 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.484

Length

277 amino acids

Sequence
(BLAST)

001: MDQDHELWRT LRCASKAQDK TSVDSLMLRY RPIAPKPTTT GQPFVGSTST TRTKRKYVRV SKNNKATCRS KNDVRSSSTD PENGREDLVT LQLMPERSTP
101: LSLDLNNFDP TVKTIIGDGT CKTGAWLKFN GGEDAVHQVP VETWVTVESV NGGSASHAVG CTDEEIAEAI DKDTRPAFIS DGSNRVVMVN ESYRKTVTGD
201: YGFGGEPSSL LPEVIVWLVV DQTATFYEYR TFTCKVRLEY TWRETKYVKT VPCDVWKMEF GGFAWRLDTT AALTLWL

Best Arabidopsis Sequence Match ( AT5G40800.1 )
(BLAST)

001: MDQDHELWRT LRCAGKAQDK TSVDTLMLKY RPIAPKPTTT GQPLVGDTSS TRRTKRKYVR VSKNNKATCR SKTNGFRSSS TDPENGREDI VTLQLLPERS
101: TPLSLDHNNL DPTVETINGD ETCNTDTWLK FNGGDDALQQ VPVETWVTVE SVNSGLVSHA VGLTDEELTY ALDKDTCPGF ISDGSNRVVM VNEAYRRIVT
201: GDGGFGREVI VWLVVDQTAT FCDYRTFTCK VRMEYTWRET KYTKTLPCDV WKMEFGGFAW RLDTTAALTL WL

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FKS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.