Factsheet for Solyc06g007630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053174	Potato	mitochondrion	98.14	98.14
Bra029651.1-P	Field mustard	mitochondrion	67.7	70.78
CDY35934	Canola	mitochondrion	67.7	70.78
AT3G07480.1	Thale cress	mitochondrion, plastid	69.57	70.44
CDY28047	Canola	mitochondrion	67.7	69.43
Zm00001d006119_P001	Maize	mitochondrion	68.32	69.18
GSMUA_Achr5P25690_001	Banana	mitochondrion	68.32	68.32
KRG99558	Soybean	mitochondrion	65.84	67.95
KRH46572	Soybean	mitochondrion	66.46	67.72
EER99179	Sorghum	mitochondrion	66.46	67.3
Os09t0514600-00	Rice	mitochondrion	65.84	67.09
TraesCS5D01G306200.1	Wheat	mitochondrion	63.98	64.38
TraesCS5B01G298800.1	Wheat	plastid	63.98	64.38
Zm00001d021141_P001	Maize	mitochondrion	65.22	63.64
Bra016480.1-P	Field mustard	cytosol	23.6	63.33
HORVU5Hr1G078540.2	Barley	mitochondrion	62.73	61.96
VIT_07s0289g00020.t01	Wine grape	mitochondrion	62.73	61.96
VIT_07s0141g00320.t01	Wine grape	mitochondrion	62.11	61.35
CDY43407	Canola	mitochondrion	26.09	56.76
GSMUA_Achr11P...	Banana	mitochondrion	70.19	48.71

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009719	GO:GO:0009735	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR012675
UniProt:K4C3E4	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc06g007630.1	EnsemblPlants:Solyc06g007630.1.1
UniParc:UPI000276631B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1644026..1644511

Molecular Weight (calculated)

17515.9 Da

IEP (calculated)

8.864

GRAVY (calculated)

-0.280

Length

161 amino acids

Sequence
(BLAST)

001: MAIAYLRRFA SRIARNTSLS SSFGSSIARS SASSSSPSAS AKVADRIVKL SAVDPDGNKR DVVGLSGQTL LKALTNQGLI DPDSHRLEDI DACSAECEVH
101: IAQEWLEKLP PASYDEKYVL KRNSRARVLN KHSRLGCQVV LSQELQGMVV ALPEPKPWDI P

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.