Factsheet for TraesCS5B01G298800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 16595579
plastid: 18419817
mitochondrion: 21043471

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G306200.1	Wheat	mitochondrion	100.0	100.0
HORVU5Hr1G078540.2	Barley	mitochondrion	95.0	93.25
EER99179	Sorghum	mitochondrion	86.25	86.79
Zm00001d006119_P001	Maize	mitochondrion	85.62	86.16
Os09t0514600-00	Rice	mitochondrion	83.75	84.81
Zm00001d021141_P001	Maize	mitochondrion	85.0	82.42
GSMUA_Achr5P25690_001	Banana	mitochondrion	67.5	67.08
Solyc06g007630.1.1	Tomato	plastid	64.38	63.98
PGSC0003DMT400053174	Potato	mitochondrion	64.38	63.98
PGSC0003DMT400071190	Potato	mitochondrion	58.75	59.87
AT3G07480.1	Thale cress	mitochondrion, plastid	56.88	57.23
Bra029651.1-P	Field mustard	mitochondrion	54.38	56.49
CDY35934	Canola	mitochondrion	54.38	56.49
KRG99558	Soybean	mitochondrion	55.0	56.41
CDY28047	Canola	mitochondrion	55.0	56.05
KRH46572	Soybean	mitochondrion	55.0	55.7
Bra016480.1-P	Field mustard	cytosol	20.62	55.0
CDY43407	Canola	mitochondrion	23.12	50.0
VIT_07s0289g00020.t01	Wine grape	mitochondrion	50.62	49.69
VIT_07s0141g00320.t01	Wine grape	mitochondrion	50.0	49.08
GSMUA_Achr11P...	Banana	mitochondrion	70.0	48.28

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719	GO:GO:0009735
GO:GO:0051536	InterPro:IPR012675	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292	EnsemblPlantsGene:TraesCS5B01G298800
EnsemblPlants:TraesCS5B01G298800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:482203022..482203659

Molecular Weight (calculated)

17176.0 Da

IEP (calculated)

8.350

GRAVY (calculated)

0.078

Length

160 amino acids

Sequence
(BLAST)

001: MAIAARALRR LPLHLAPALA RPFCAVSPAA AAPAPAAASA KVADRIVRVL AIDLDGGRRE VVGLAGQTLL RALVNAGLIE AASHRLDDID ACSAECEVHI
101: AQEWLEKMPA ASYEERYVLT RASRNRELNK HARLGCQVVL GKEHQGMVVA LPEPKPWDIP

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.