Factsheet for Zm00001d021141_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006119_P001	Maize	mitochondrion	87.27	90.57
Os09t0514600-00	Rice	mitochondrion	86.06	89.87
TraesCS5D01G306200.1	Wheat	mitochondrion	82.42	85.0
TraesCS5B01G298800.1	Wheat	plastid	82.42	85.0
HORVU5Hr1G078540.2	Barley	mitochondrion	79.39	80.37
GSMUA_Achr5P25690_001	Banana	mitochondrion	69.09	70.81
Solyc06g007630.1.1	Tomato	plastid	63.64	65.22
PGSC0003DMT400053174	Potato	mitochondrion	63.64	65.22
PGSC0003DMT400071190	Potato	mitochondrion	60.0	63.06
Bra029651.1-P	Field mustard	mitochondrion	55.15	59.09
CDY35934	Canola	mitochondrion	55.15	59.09
KRG99558	Soybean	mitochondrion	55.76	58.97
AT3G07480.1	Thale cress	mitochondrion, plastid	56.36	58.49
KRH46572	Soybean	mitochondrion	55.76	58.23
CDY28047	Canola	mitochondrion	55.15	57.96
Bra016480.1-P	Field mustard	cytosol	20.61	56.67
VIT_07s0289g00020.t01	Wine grape	mitochondrion	54.55	55.21
VIT_07s0141g00320.t01	Wine grape	mitochondrion	53.94	54.6
GSMUA_Achr11P...	Banana	mitochondrion	70.91	50.43
CDY43407	Canola	mitochondrion	21.82	48.65

Protein Annotations

EntrezGene:100284586	InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	UniProt:B6TVC7	InterPro:Beta-grasp_dom_sf
EMBL:EU968942	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR012675
ProteinID:ONM56368.1	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292	UniParc:UPI000182DE94	EnsemblPlantsGene:Zm00001d021141
EnsemblPlants:Zm00001d021141_P001	EnsemblPlants:Zm00001d021141_T001	SEG:seg	:	:	:

Description

Ferredoxin

Coordinates

chr7:-:143879896..143880393

Molecular Weight (calculated)

17837.6 Da

IEP (calculated)

7.508

GRAVY (calculated)

0.041

Length

165 amino acids

Sequence
(BLAST)

001: MAIAARVLRR LPLHLYPSLA RSFCAVSPAA ASAAPASASA APASAKVADR IVRVLAIDLE GARREVVGLS GQTLLRALAN AELIEPASHR LEDIDACSAE
101: CEVHIAQEWL DKLPPPSYEE RYVLTRASRN RELNKHARLG CQVVLTPELH GMVVAVPEPK PWDIP

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.