Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07480.1 | CDY17034 | AT1G47260.1 | 21798944 |
| AT3G07480.1 | CDY23649 | AT1G47260.1 | 21798944 |
| AT3G07480.1 | CDY47592 | AT1G47260.1 | 21798944 |
| AT3G07480.1 | CDY67628 | AT1G47260.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016480.1-P | Field mustard | cytosol | 64.86 | 80.0 |
| CDY35934 | Canola | mitochondrion | 62.16 | 29.87 |
| CDY28047 | Canola | mitochondrion | 62.16 | 29.3 |
| AT3G07480.1 | Thale cress | mitochondrion, plastid | 60.81 | 28.3 |
| PGSC0003DMT400071190 | Potato | mitochondrion | 55.41 | 26.11 |
| Solyc06g007630.1.1 | Tomato | plastid | 56.76 | 26.09 |
| PGSC0003DMT400053174 | Potato | mitochondrion | 56.76 | 26.09 |
| Os09t0514600-00 | Rice | mitochondrion | 50.0 | 23.42 |
| EER99179 | Sorghum | mitochondrion | 50.0 | 23.27 |
| Zm00001d006119_P001 | Maize | mitochondrion | 50.0 | 23.27 |
| TraesCS5B01G298800.1 | Wheat | plastid | 50.0 | 23.12 |
| TraesCS5D01G306200.1 | Wheat | mitochondrion | 50.0 | 23.12 |
| GSMUA_Achr5P25690_001 | Banana | mitochondrion | 50.0 | 22.98 |
| KRH46572 | Soybean | mitochondrion | 48.65 | 22.78 |
| HORVU5Hr1G078540.2 | Barley | mitochondrion | 50.0 | 22.7 |
| VIT_07s0141g00320.t01 | Wine grape | mitochondrion | 50.0 | 22.7 |
| VIT_07s0289g00020.t01 | Wine grape | mitochondrion | 50.0 | 22.7 |
| KRG99558 | Soybean | mitochondrion | 47.3 | 22.44 |
| Zm00001d021141_P001 | Maize | mitochondrion | 48.65 | 21.82 |
| GSMUA_Achr11P... | Banana | mitochondrion | 51.35 | 16.38 |
Protein Annotations
| EnsemblPlants:CDY43407 | EnsemblPlantsGene:GSBRNA2T00076601001 | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf | InterPro:IPR012675 | PANTHER:PTHR23426 |
| PANTHER:PTHR23426:SF35 | ProteinID:CDY43407 | ProteinID:CDY43407.1 | UniParc:UPI0004EDF5BA | UniProt:A0A078HZV4 | MapMan:35.2 |
Description
BnaC03g75350DBnaC03g75350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZV4]
Coordinates
chrLK032555:+:237611..238616
Molecular Weight (calculated)
8661.5 Da
IEP (calculated)
11.884
GRAVY (calculated)
-0.714
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MTTLAQRNVK FRSQRNGSRS SLRVRTYDEE YVLKRKLRSR VLNRHSRVGC QVVLRQEFQG MVVAGPEAKP WDIA
001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP
Arabidopsis Description
2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.