CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99558	Soybean	mitochondrion	93.04	94.23
PGSC0003DMT400053174	Potato	mitochondrion	67.72	66.46
Solyc06g007630.1.1	Tomato	plastid	67.72	66.46
VIT_07s0289g00020.t01	Wine grape	mitochondrion	67.72	65.64
VIT_07s0141g00320.t01	Wine grape	mitochondrion	67.72	65.64
PGSC0003DMT400071190	Potato	mitochondrion	65.19	65.61
Bra029651.1-P	Field mustard	mitochondrion	63.92	65.58
CDY35934	Canola	mitochondrion	63.92	65.58
CDY28047	Canola	mitochondrion	63.29	63.69
AT3G07480.1	Thale cress	mitochondrion, plastid	62.66	62.26
EER99179	Sorghum	mitochondrion	60.76	60.38
Os09t0514600-00	Rice	mitochondrion	60.13	60.13
GSMUA_Achr5P25690_001	Banana	mitochondrion	60.76	59.63
Zm00001d006119_P001	Maize	mitochondrion	59.49	59.12
Zm00001d021141_P001	Maize	mitochondrion	58.23	55.76
TraesCS5B01G298800.1	Wheat	plastid	55.7	55.0
TraesCS5D01G306200.1	Wheat	mitochondrion	55.7	55.0
Bra016480.1-P	Field mustard	cytosol	20.89	55.0
HORVU5Hr1G078540.2	Barley	mitochondrion	55.06	53.37
CDY43407	Canola	mitochondrion	22.78	48.65
GSMUA_Achr11P...	Banana	mitochondrion	63.29	43.1

Protein Annotations

EntrezGene:100801962	InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	EMBL:ACUP02005350	InterPro:Beta-grasp_dom_sf
EnsemblPlantsGene:GLYMA_08G343100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719	GO:GO:0009735	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	UniProt:I1KYX9	InterPro:IPR012675	EnsemblPlants:KRH46572	ProteinID:KRH46572
ProteinID:KRH46572.1	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292	UniParc:UPI000233911C	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:45850654..45851723

Molecular Weight (calculated)

17541.0 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.211

Length

158 amino acids

Sequence
(BLAST)

001: MAVANLQRLS SQVHRLPSVS FFSKSLISRT STSSSSTKKV ADRIVRLSAI DFAGKKHEVV GLAGQTLLKA LINTGLVDPE SHRLEEIDAC AAHCEVNIAQ
101: EWLDKLPPRS YDEEYVLVRN SRARVLNKHS RLGCQVLLDH DLEGMVVALP EPRPWDTS

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.