CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17034
CDY23649
CDY47592
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07480.1	CDY17034	AT1G47260.1	21798944
AT3G07480.1	CDY23649	AT1G47260.1	21798944
AT3G07480.1	CDY47592	AT1G47260.1	21798944
AT3G07480.1	CDY67628	AT1G47260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029651.1-P	Field mustard	mitochondrion	96.82	98.7
CDY35934	Canola	mitochondrion	96.82	98.7
AT3G07480.1	Thale cress	mitochondrion, plastid	85.99	84.91
PGSC0003DMT400053174	Potato	mitochondrion	69.43	67.7
Solyc06g007630.1.1	Tomato	plastid	69.43	67.7
PGSC0003DMT400071190	Potato	mitochondrion	65.61	65.61
KRH46572	Soybean	mitochondrion	63.69	63.29
KRG99558	Soybean	mitochondrion	61.78	62.18
CDY43407	Canola	mitochondrion	29.3	62.16
VIT_07s0289g00020.t01	Wine grape	mitochondrion	63.69	61.35
VIT_07s0141g00320.t01	Wine grape	mitochondrion	63.06	60.74
GSMUA_Achr5P25690_001	Banana	mitochondrion	59.87	58.39
Zm00001d006119_P001	Maize	mitochondrion	58.6	57.86
Os09t0514600-00	Rice	mitochondrion	57.96	57.59
EER99179	Sorghum	mitochondrion	57.32	56.6
Zm00001d021141_P001	Maize	mitochondrion	57.96	55.15
TraesCS5B01G298800.1	Wheat	plastid	56.05	55.0
TraesCS5D01G306200.1	Wheat	mitochondrion	56.05	55.0
HORVU5Hr1G078540.2	Barley	mitochondrion	56.05	53.99
GSMUA_Achr11P...	Banana	mitochondrion	59.87	40.52

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	GO:A0A078GSE1	UniProt:A0A078GSE1	InterPro:Beta-grasp_dom_sf
EnsemblPlants:CDY28047	ProteinID:CDY28047	ProteinID:CDY28047.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900
GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00038987001	InterPro:IPR012675	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292
UniParc:UPI0004EF23DC	SEG:seg	:	:	:	:

Description

BnaC05g44490DBnaC05g44490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSE1]

Coordinates

chrLK032213:-:378336..379767

Molecular Weight (calculated)

17221.7 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.282

Length

157 amino acids

Sequence
(BLAST)

001: MATNLLKLSS QIRRLSPLTG SLTVRTSATS TGSSGSKKVS DRIVKLSAID ADGDKKDIIG LSGQTLLRAL THTGLIDPLS HRLDDIDACS AECEVQIAEE
101: WLEKLPPRTY DEEYVLKRNS RSRVLNKHSR LGCQVVLTQE LQGMVVAVPE AKPWDIP

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.