Factsheet for Zm00001d006119_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 14690504
extracellular: 20408568
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99179	Sorghum	mitochondrion	96.86	96.86
Os09t0514600-00	Rice	mitochondrion	91.19	91.77
Zm00001d021141_P001	Maize	mitochondrion	90.57	87.27
TraesCS5D01G306200.1	Wheat	mitochondrion	86.16	85.62
TraesCS5B01G298800.1	Wheat	plastid	86.16	85.62
HORVU5Hr1G078540.2	Barley	mitochondrion	83.02	80.98
GSMUA_Achr5P25690_001	Banana	mitochondrion	71.07	70.19
Solyc06g007630.1.1	Tomato	plastid	69.18	68.32
PGSC0003DMT400053174	Potato	mitochondrion	67.92	67.08
PGSC0003DMT400071190	Potato	mitochondrion	64.15	64.97
AT3G07480.1	Thale cress	mitochondrion, plastid	61.01	61.01
Bra029651.1-P	Field mustard	mitochondrion	58.49	60.39
CDY35934	Canola	mitochondrion	58.49	60.39
KRG99558	Soybean	mitochondrion	58.49	59.62
KRH46572	Soybean	mitochondrion	59.12	59.49
CDY28047	Canola	mitochondrion	57.86	58.6
Bra016480.1-P	Field mustard	cytosol	22.01	58.33
VIT_07s0289g00020.t01	Wine grape	mitochondrion	55.35	53.99
VIT_07s0141g00320.t01	Wine grape	mitochondrion	54.72	53.37
CDY43407	Canola	mitochondrion	23.27	50.0
GSMUA_Achr11P...	Banana	mitochondrion	72.33	49.57

Protein Annotations

EntrezGene:100284188	InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30	MapMan:35.2	UniProt:B6SLA5	InterPro:Beta-grasp_dom_sf
EMBL:EU953520	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR012675
ProteinID:ONM22852.1	PANTHER:PTHR23426	PANTHER:PTHR23426:SF35	SUPFAM:SSF54292	UniParc:UPI000182AE3E	EnsemblPlantsGene:Zm00001d006119
EnsemblPlants:Zm00001d006119_P001	EnsemblPlants:Zm00001d006119_T001	SEG:seg	:	:	:

Description

2Fe-2S ferredoxin-like superfamily protein

Coordinates

chr2:-:199181914..199182393

Molecular Weight (calculated)

17123.7 Da

IEP (calculated)

7.975

GRAVY (calculated)

0.006

Length

159 amino acids

Sequence
(BLAST)

001: MAIAARALRR LPLHLSPSIS RSFCAVSPAA ASAPAAASAK VADRIVRVLA IDPDGARRDV VGLSGQTLLR ALANAGLIEP ASHRLEDIDA CSAECEVHIA
101: QEWLDKLPPP SYEERYVLTR ASRNRELNKH ARLGCQVVLA PELQGMVVAI PEPKPWDIP

Best Arabidopsis Sequence Match ( AT3G07480.1 )
(BLAST)

001: MATTLQKLSS QIHRLSPFTR SLIVRTSATS APSPSLGSKK VSDRIVKLSA IDPDGYKQDI IGLSGQTLLR ALTHTGLIDP ASHRLDDIEA CSAECEVQIA
101: EEWLEKLPPR TYDEEYVLKR SSRSRILNKH SRLGCQVVLT QELQGMVVAV PEAKPWDIP

Arabidopsis Description

2Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SRR8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.