Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
extracellular: 26583031 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003527 | Potato | plastid | 79.38 | 95.42 |
| PGSC0003DMT400069622 | Potato | cytosol | 17.84 | 89.64 |
| Solyc08g044250.1.1 | Tomato | mitochondrion | 2.93 | 67.27 |
| VIT_14s0066g01910.t01 | Wine grape | cytosol | 47.82 | 57.76 |
| CDY49049 | Canola | plastid | 42.82 | 55.33 |
| Bra039123.1-P | Field mustard | plastid | 42.98 | 54.69 |
| CDY37526 | Canola | plastid | 42.51 | 54.64 |
| AT3G01370.1 | Thale cress | plastid | 43.54 | 54.3 |
| GSMUA_Achr10P... | Banana | plastid | 39.73 | 50.15 |
| KRG93409 | Soybean | plastid | 40.44 | 49.66 |
| KRG93411 | Soybean | plastid | 38.46 | 46.91 |
| Os04t0464800-00 | Rice | plastid | 29.58 | 43.52 |
| OQU81723 | Sorghum | plastid | 35.53 | 42.87 |
| Zm00001d025633_P007 | Maize | plastid | 35.13 | 42.64 |
| Zm00001d025629_P007 | Maize | plastid | 35.13 | 42.64 |
| HORVU2Hr1G081140.2 | Barley | plastid | 35.45 | 41.08 |
| TraesCS2B01G346500.1 | Wheat | plastid | 35.29 | 41.01 |
| TraesCS2D01G327400.1 | Wheat | plastid | 35.13 | 40.83 |
| TraesCS2A01G335400.1 | Wheat | plastid | 35.13 | 39.62 |
| Solyc03g119450.2.1 | Tomato | nucleus | 22.44 | 34.51 |
| Solyc07g039500.2.1 | Tomato | plastid | 21.49 | 33.37 |
| Solyc09g083350.2.1 | Tomato | mitochondrion | 23.0 | 32.84 |
| Solyc02g086200.1.1 | Tomato | plastid | 18.87 | 29.68 |
| Solyc01g105090.2.1 | Tomato | plastid | 6.34 | 21.33 |
| Solyc09g005270.2.1 | Tomato | mitochondrion | 6.11 | 21.04 |
| Solyc06g082990.2.1 | Tomato | mitochondrion | 6.98 | 19.05 |
| Solyc12g014280.1.1 | Tomato | mitochondrion, plastid | 6.19 | 18.89 |
| Solyc07g047900.2.1 | Tomato | mitochondrion, nucleus | 7.3 | 16.06 |
Protein Annotations
| MapMan:16.12.2.1.2 | Gene3D:2.30.110.10 | Gene3D:3.30.110.60 | ncoils:Coil | GO:GO:0000372 | GO:GO:0000373 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009532 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0048037 | InterPro:IPR001890 | InterPro:IPR012349 | InterPro:IPR035920 |
| UniProt:K4BBN2 | PFAM:PD010559 | PFAM:PF01985 | PFAM:PF13883 | PFscan:PS51295 | PANTHER:PTHR31846 |
| PANTHER:PTHR31846:SF16 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF50475 | SUPFAM:SSF75471 | SignalP:SignalP-TM |
| EnsemblPlantsGene:Solyc02g087250.2 | EnsemblPlants:Solyc02g087250.2.1 | InterPro:Split_barrel_FMN-bd | TMHMM:TMhelix | UniParc:UPI0002767F2E | InterPro:YhbY_like_sf |
| SEG:seg | : | : | : | : | : |
Description
CRM-domain containing factor CFM2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G01370) UniProtKB/Swiss-Prot;Acc:Q8L7C2]
Coordinates
chr2:-:49695875..49707428
Molecular Weight (calculated)
141433.0 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.550
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNIINRAASI FLLLVFFLAF FKDSVHGRPL LLSMSRPKPD DAALFARWLV SQNYWGVLNT IASDMGGAPF GNVVSFSDGL PDKGRGIPYF YLTTLDPTAR
0101: NALKDQRSSF TISEYAIGTC GKKDPENPSC AKITLVGKLK VVAGDPKETS FAQTALFTKH PEMEGWPKSH DFQIYKLEIE EIFMINWFGG PKPLTVDQYL
0201: QAKMIASSSS TPMLLPFCNF HPINPSKTLL KPSPSHSLFS STPSLSPKPF FPRDSLPVFA ASPDTEALPE SAIRRIADKL RSLGFVEQPK NQETQENALS
0301: SNPTANSPGQ IFVPLPTQLP KYRVGHTLDT SWSTPENPVP QPGLGKSIQK FHELRDEFLK EKDKERLKNK EYKKERAPSL AELTLPAEEL RRLRTVGIAL
0401: RKKLKIGKAG ITEGIVNGIH ERWRRIELVK ITCEDICRLN MKRTHELLEK KTGGLVIWRS GSNIILYRGA DYKYPYFSEN SFENNSAQDA NPDLFMGAEE
0501: HMTNSSGIDA VKSDASDRKS PPRVIQGVGS PDRVRFELPG EAEHTEEADK LLEGLGPRFT DWWGCEPLPI DADLLPAIVP GYKRPFRLLP YGVKPKLTND
0601: EMTTLRRLGR PLPCHFVLGR NRKLQGLAAA IVKLWEKCEI AKVAVKRGVQ NTNSELMVEE LKWLTGGTLL SRDREFIVFY RGKDFLPSAV SSAIEERRKQ
0701: VFEEEKRNGF NSSVANAKER KQSTTESVSD DGHAHRNNQK GVQEKKKLTS MEAAIKRTAD KLTTALEKKA EAEKLLLELE EDEVPQQSDM DKEGITEEER
0801: FMLRKIGLRM KPFLLLGRRG VFDGTVENMH LHWKYRELVK VITGRKNIEE VHQIARMLEA ESGGILVAVE RVNKGYAIIV YRGKNYERPA SLRPQTLLSK
0901: REAMKRSIEA QRRQSLKLHV LKLTQNIEAL QSRLAKNEEI SHIQSPDIVD RQVPVMGISD AAGGTNYQSI VASPIEDSGD AAEDTDPSSQ KELSNDFSDT
1001: DHDSQQEFPI NPFFQYEGKV EAMGDTIQPQ HQSISSIKES KSMFNVNVDQ ETFGSAVSES VSKSSRGEVK IHFSETRSFN KPREVNNKME VSQPPPVKPQ
1101: QTLRSTRSRS EGMSTRRVQL SNRERLLLRK QALKMKKQPV LAVGRSNIVT GVAKNIKEHF KKYPLAIVNV KGRAKGTSVR EVVFKLEQAT GAVLVSQEPS
1201: KVILYRGWGP GGERGASNGN DTSNSKNSRE QKELMSISPE LISAIRLECG LQSNNDMEVA S
0101: NALKDQRSSF TISEYAIGTC GKKDPENPSC AKITLVGKLK VVAGDPKETS FAQTALFTKH PEMEGWPKSH DFQIYKLEIE EIFMINWFGG PKPLTVDQYL
0201: QAKMIASSSS TPMLLPFCNF HPINPSKTLL KPSPSHSLFS STPSLSPKPF FPRDSLPVFA ASPDTEALPE SAIRRIADKL RSLGFVEQPK NQETQENALS
0301: SNPTANSPGQ IFVPLPTQLP KYRVGHTLDT SWSTPENPVP QPGLGKSIQK FHELRDEFLK EKDKERLKNK EYKKERAPSL AELTLPAEEL RRLRTVGIAL
0401: RKKLKIGKAG ITEGIVNGIH ERWRRIELVK ITCEDICRLN MKRTHELLEK KTGGLVIWRS GSNIILYRGA DYKYPYFSEN SFENNSAQDA NPDLFMGAEE
0501: HMTNSSGIDA VKSDASDRKS PPRVIQGVGS PDRVRFELPG EAEHTEEADK LLEGLGPRFT DWWGCEPLPI DADLLPAIVP GYKRPFRLLP YGVKPKLTND
0601: EMTTLRRLGR PLPCHFVLGR NRKLQGLAAA IVKLWEKCEI AKVAVKRGVQ NTNSELMVEE LKWLTGGTLL SRDREFIVFY RGKDFLPSAV SSAIEERRKQ
0701: VFEEEKRNGF NSSVANAKER KQSTTESVSD DGHAHRNNQK GVQEKKKLTS MEAAIKRTAD KLTTALEKKA EAEKLLLELE EDEVPQQSDM DKEGITEEER
0801: FMLRKIGLRM KPFLLLGRRG VFDGTVENMH LHWKYRELVK VITGRKNIEE VHQIARMLEA ESGGILVAVE RVNKGYAIIV YRGKNYERPA SLRPQTLLSK
0901: REAMKRSIEA QRRQSLKLHV LKLTQNIEAL QSRLAKNEEI SHIQSPDIVD RQVPVMGISD AAGGTNYQSI VASPIEDSGD AAEDTDPSSQ KELSNDFSDT
1001: DHDSQQEFPI NPFFQYEGKV EAMGDTIQPQ HQSISSIKES KSMFNVNVDQ ETFGSAVSES VSKSSRGEVK IHFSETRSFN KPREVNNKME VSQPPPVKPQ
1101: QTLRSTRSRS EGMSTRRVQL SNRERLLLRK QALKMKKQPV LAVGRSNIVT GVAKNIKEHF KKYPLAIVNV KGRAKGTSVR EVVFKLEQAT GAVLVSQEPS
1201: KVILYRGWGP GGERGASNGN DTSNSKNSRE QKELMSISPE LISAIRLECG LQSNNDMEVA S
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
Arabidopsis Description
CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.