Factsheet for Solyc12g014280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039655	Potato	mitochondrion, plastid	91.28	95.2
Solyc09g005270.2.1	Tomato	mitochondrion	72.4	81.69
Bra011945.1-P	Field mustard	mitochondrion	30.99	66.32
AT2G28480.1	Thale cress	mitochondrion	52.54	58.33
Bra000492.1-P	Field mustard	mitochondrion	49.88	58.19
KRH29618	Soybean	nucleus	39.95	58.1
CDY31205	Canola	mitochondrion	50.36	55.91
CDX83289	Canola	mitochondrion	49.88	55.38
VIT_05s0102g00700.t01	Wine grape	plastid	55.69	55.29
KRH24621	Soybean	mitochondrion	53.51	51.76
TraesCS3D01G505800.1	Wheat	mitochondrion	48.67	51.15
TraesCS3B01G562100.1	Wheat	mitochondrion	48.67	50.76
HORVU3Hr1G110360.1	Barley	mitochondrion	48.18	49.75
EES02081	Sorghum	mitochondrion	48.18	49.14
Zm00001d042043_P001	Maize	mitochondrion	46.73	48.98
Os01t0958400-02	Rice	mitochondrion	48.67	48.2
GSMUA_Achr3P16860_001	Banana	mitochondrion	49.88	46.09
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	48.43	46.08
CDY15751	Canola	mitochondrion, plastid, vacuole	38.01	45.24
Solyc08g044250.1.1	Tomato	mitochondrion	4.36	32.73
Solyc01g105090.2.1	Tomato	plastid	29.3	32.27
Solyc06g082990.2.1	Tomato	mitochondrion	25.91	23.16
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	24.21	17.45
Solyc03g119450.2.1	Tomato	nucleus	18.4	9.27
Solyc09g083350.2.1	Tomato	mitochondrion	17.92	8.38
Solyc07g039500.2.1	Tomato	plastid	16.22	8.25
Solyc02g086200.1.1	Tomato	plastid	15.98	8.23
Solyc02g087250.2.1	Tomato	extracellular	18.89	6.19

Protein Annotations

EnsemblPlants:Solyc12g014280.1.1	EnsemblPlantsGene:Solyc12g014280.1	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000276A7CC	UniProt:K4DCW3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr12:+:5095094..5099206

Molecular Weight (calculated)

48041.4 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.796

Length

413 amino acids

Sequence
(BLAST)

001: MTNPLFRGFR RLALLSLSKP LFSSSTFSRH LSLSNLVRPI LGNPEKFLNL SRLVLKERLI QQNPCWESRN FSHGRLDFVM TRDGKLKFEE HEVEAPKSEK
101: WKTKKKLKLQ RKREKKKRKA ANKRDPRRLG VQGKKKKQKF DTAEERIKQK IENAKVKEAM LIERLKRYEV TKVQGPEVKP HFLTGEERFY IKKMAQKKSN
201: YVPIGKRGVF GGVILNMHLH WKRHETVKVI CKPCKPGQIQ EYVDEIARLS GGIPIQIIAN DTIVFYRGRE YVQPEIMYPI DTLSKKRALE KSKYEQSLES
301: VRHFIAIAEK ELALYYRHVA LYDEPNIQSA YSILDDSTST SEKRNDEIGE ENYSADESIS LDLELPQVDD YCSDDKQSLS EFGFEDTDES SSDELDSGEE
401: ETSNYCGSIW GNY

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.