Factsheet for Os01t0958400-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042043_P001	Maize	mitochondrion	72.42	76.65
TraesCS3B01G562100.1	Wheat	mitochondrion	72.66	76.52
TraesCS3D01G505800.1	Wheat	mitochondrion	71.22	75.57
EES02081	Sorghum	mitochondrion	73.14	75.31
HORVU3Hr1G110360.1	Barley	mitochondrion	70.98	74.0
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	71.7	68.89
Bra011945.1-P	Field mustard	mitochondrion	30.22	65.28
Solyc09g005270.2.1	Tomato	mitochondrion	49.64	56.56
PGSC0003DMT400030768	Potato	mitochondrion	49.64	56.25
KRH29618	Soybean	nucleus	37.41	54.93
Bra000492.1-P	Field mustard	mitochondrion	45.8	53.95
VIT_05s0102g00700.t01	Wine grape	plastid	51.32	51.44
AT2G28480.1	Thale cress	mitochondrion	45.8	51.34
CDY31205	Canola	mitochondrion	45.8	51.34
PGSC0003DMT400039655	Potato	mitochondrion, plastid	48.68	51.26
CDX83289	Canola	mitochondrion	45.56	51.08
GSMUA_Achr3P16860_001	Banana	mitochondrion	53.96	50.34
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	48.2	48.67
KRH24621	Soybean	mitochondrion	49.16	48.01
Os06t0304500-01	Rice	mitochondrion	35.01	41.95
CDY15751	Canola	mitochondrion, plastid, vacuole	34.05	40.92
Os04t0492900-03	Rice	mitochondrion	28.54	24.84
Os05t0145300-01	Rice	mitochondrion	24.22	18.04
Os05t0551900-00	Rice	plastid	20.14	10.74
Os11t0592400-00	Rice	plastid	21.1	9.93
Os08t0360100-01	Rice	plastid	17.27	9.93
Os04t0464800-00	Rice	plastid	19.66	9.57
Os09t0363100-01	Rice	plastid	20.14	8.87

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:4325389	EMBL:AK066987	ProteinID:BAD87110.1	ProteinID:BAD88159.1
ProteinID:BAS76307.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	EnsemblPlantsGene:Os01g0958400	EnsemblPlants:Os01t0958400-02	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	UniProt:Q5JK63	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI00004C2898	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

Similar to CFM6. (Os01t0958400-01);Similar to CFM6. (Os01t0958400-02);RNA-binding, CRM domain domain containing protein. (Os01t0958400-03)

Coordinates

chr1:+:42240837..42244651

Molecular Weight (calculated)

47549.0 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.765

Length

417 amino acids

Sequence
(BLAST)

001: MATRVLSQNL RKLASFSLLN LSQRAPISPS PEPLRPAIAS FGKCLNPFYQ FSPPWMVRWA SHSSVNLVLS DDGKPKFEIE EVEPSKKRGY LTKKRLKLQR
101: KREKKKRKEA NKNDPRRIRP KGKKIKQKFP TPEARLKYKI EKAKLKEAML VEKLKKYEIA KAQGPMAKQD DLDGEERFYL KKVSQKKSNY VPVGRRGVFG
201: GVILNMHLHW KKHETVKVIC KPCKPGQIQE YASEIARLSG GIPINTIGND TIVFYRGKNY VQPDVMSPVD TLSKKKALEK SKYEQSLETV RRFIAVSEKE
301: LELYYRHIAL YGNPQSQNVD PVYCDDRRAA SLKMEEPSQG KDLSHMDNDG FSDITDASES DEEANPSEYD DNDDETGDNI GTVLYDHGGF KLNGNSVDDH
401: LSPALAVSMF MLYGTWI

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.