Factsheet for Zm00001d042043_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02081	Sorghum	mitochondrion	92.39	89.88
TraesCS3D01G505800.1	Wheat	mitochondrion	76.4	76.59
TraesCS3B01G562100.1	Wheat	mitochondrion	76.65	76.26
HORVU3Hr1G110360.1	Barley	mitochondrion	76.4	75.25
Os01t0958400-02	Rice	mitochondrion	76.65	72.42
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	77.67	70.51
Bra011945.1-P	Field mustard	mitochondrion	32.74	66.84
Solyc09g005270.2.1	Tomato	mitochondrion	52.28	56.28
PGSC0003DMT400030768	Potato	mitochondrion	51.78	55.43
KRH29618	Soybean	nucleus	39.85	55.28
Bra000492.1-P	Field mustard	mitochondrion	49.49	55.08
CDY31205	Canola	mitochondrion	49.49	52.42
AT2G28480.1	Thale cress	mitochondrion	49.24	52.15
CDX83289	Canola	mitochondrion	49.24	52.15
VIT_05s0102g00700.t01	Wine grape	plastid	53.81	50.96
GSMUA_Achr3P16860_001	Banana	mitochondrion	56.85	50.11
PGSC0003DMT400039655	Potato	mitochondrion, plastid	50.25	50.0
KRH24621	Soybean	mitochondrion	51.52	47.54
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	48.98	46.73
CDY15751	Canola	mitochondrion, plastid, vacuole	36.55	41.5
Zm00001d025706_P002	Maize	mitochondrion	34.77	40.53
Zm00001d003196_P001	Maize	mitochondrion	30.2	24.54
Zm00001d024823_P001	Maize	mitochondrion	23.35	14.07
Zm00001d010884_P001	Maize	mitochondrion	22.59	13.8
Zm00001d038922_P001	Maize	extracellular	21.07	10.44
Zm00001d007572_P001	Maize	plastid	22.08	10.33
Zm00001d032373_P004	Maize	plastid	17.77	9.01
Zm00001d025629_P007	Maize	plastid	21.83	8.28
Zm00001d025633_P007	Maize	plastid	21.83	8.28
Zm00001d020230_P006	Maize	plastid	19.8	8.09

Protein Annotations

EntrezGene:100284661	Gene3D:3.30.110.60	MapMan:35.1	UniProt:B6TW67	EMBL:BT086559	ncoils:Coil
EMBL:EU969232	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890
InterPro:IPR035920	ProteinID:ONM34368.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000182D850	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d042043
EnsemblPlants:Zm00001d042043_P001	EnsemblPlants:Zm00001d042043_T001	SEG:seg	:	:	:

Description

RNA-binding CRS1 / YhbY (CRM) domain protein

Coordinates

chr3:-:148439507..148444239

Molecular Weight (calculated)

44843.9 Da

IEP (calculated)

10.133

GRAVY (calculated)

-0.770

Length

394 amino acids

Sequence
(BLAST)

001: MATRILSRQN LRKLASFTLQ NISQRQLVPP YPPALRSTIV SPSKFLSPLY LSGHSLAVRW ATYGSVNLVL SDDGKPKFQI EEVEPSTKRR YLTKKRLKLQ
101: RKKEKKKRKE ANKNDPRRIR PKGKKIKQKF PTPEARLKYK IEKAKLKEAR LVEKLKKYEI AKAQGPMAKV DDLSGEERFY LKKVSQKKSN YVPVGRRGVF
201: GGVILNMHLH WKKHETVKVI CKPCKPGQIQ EYANEIARLS GGIPVNVIGD DTIVFYRGKS YVQPEVMSPV DTLSKKKALE KSKYEQSLET VRRFIAISEK
301: ELELYYRHVA LYGISQSQKS DLVCGDDREA SLLKMEGLDR GKGQEPHLAT NHFSDLHIGD VSESDEEDSS GSEYDADDDD NETESMASVS EDAS

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.