Factsheet for Zm00001d024823_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010884_P001	Maize	mitochondrion	86.24	87.44
EES17695	Sorghum	plastid	90.52	86.42
Os05t0145300-01	Rice	mitochondrion	63.76	74.46
HORVU1Hr1G019580.2	Barley	plastid	62.69	71.68
TraesCS1A01G108800.1	Wheat	mitochondrion	64.98	69.67
TraesCS1D01G090300.1	Wheat	mitochondrion	64.83	69.62
TraesCS1B01G108100.1	Wheat	mitochondrion	64.37	69.02
CDY66660	Canola	plastid	41.13	59.51
Bra033017.1-P	Field mustard	plastid	42.51	57.68
CDY13722	Canola	mitochondrion, nucleus, plastid	43.73	57.2
CDX83707	Canola	mitochondrion, nucleus, plastid	44.04	57.14
Bra025285.1-P	Field mustard	plastid	45.26	55.74
AT3G27550.2	Thale cress	mitochondrion	45.57	54.48
GSMUA_Achr9P19780_001	Banana	nucleus	45.72	52.83
PGSC0003DMT400015748	Potato	nucleus, plastid	41.74	51.22
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	42.66	48.69
KRH56532	Soybean	mitochondrion	46.02	46.09
KRG93197	Soybean	mitochondrion	45.26	45.33
CDY03983	Canola	cytosol	41.44	37.02
Zm00001d025706_P002	Maize	mitochondrion	14.83	28.7
VIT_14s0066g00360.t01	Wine grape	nucleus	45.57	27.93
Zm00001d042043_P001	Maize	mitochondrion	14.07	23.35
Zm00001d003196_P001	Maize	mitochondrion	16.36	22.06
Zm00001d038922_P001	Maize	extracellular	11.93	9.81
Zm00001d007572_P001	Maize	plastid	12.39	9.62
Zm00001d020230_P006	Maize	plastid	11.62	7.88
Zm00001d032373_P004	Maize	plastid	9.02	7.59
Zm00001d025629_P007	Maize	plastid	11.93	7.51
Zm00001d025633_P007	Maize	plastid	11.93	7.51

Protein Annotations

EnsemblPlants:Zm00001d024823_P001	EnsemblPlants:Zm00001d024823_T001	EnsemblPlantsGene:Zm00001d024823	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	ProteinID:AQK42115.1	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00084277BE	UniProt:A0A1D6J243	MapMan:35.1	:

Description

CRM-domain containing factor CFM3A chloroplastic/mitochondrial

Coordinates

chr10:+:89626222..89630017

Molecular Weight (calculated)

74468.4 Da

IEP (calculated)

9.666

GRAVY (calculated)

-1.153

Length

654 amino acids

Sequence
(BLAST)

001: MWVLRSLLRA ASPSLRHSSG RFTARGEALS AALGSAPAPA GLLAVRPRAE GGWRRAMSTK GRTMRTKVEK RMARETGRTQ RELRRAVKLR KKLMTEDEKF
101: IYNLRRAKKK VALLLQKLKK YELPDLQAPR HDPELLTAEQ LQAYKKIGFR NRNYVPVGVR GVFGGVVQNM HMHWKFHETV QVCCDNFPKE KIKEMAAMLT
201: RLSGGIVINI HNTKTIIMFR GRNYRQPKNL IPFNTLTKRK ALFKARFEQA LESQKLNIKK IETQLRRKGI NPEDPVAMAS IQRVASTFFR AIDEQQGTPY
301: IFRGDAQASA GTPEIKEPRD EPSEDSDQEE LDRFISEIET AAEKQWEEEE AAEKEESSRM RYWEREDVGD RRDFNRSYEN SDYEDRGQGR YRREHDSNIR
401: TSDVRKWDGD SSEFEASGEE WDSGDDRGNA LGFDNDRGST DEHPRRFGSM RNEKSRSTRA QDFVPRGGVG EGKGFNRSYG NPDADVHNRG QGRHRRDNKR
501: TSDARRWDDN SEIEASGEEC GSGDDRDSVL GLNNDIDTGD GHPRQFKSMR NERSRSSGRQ ISIPGGFRGS NRIPGNSADA SDGTMFRGSN GDESDTEDDD
601: LWMSDYKGGE TNSRAPKVNF PNFHSSGEDS DDNRKNGGKI GKTKKNTDES WDSD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.