CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13722	Canola	mitochondrion, nucleus, plastid	97.02	97.8
Bra025285.1-P	Field mustard	plastid	95.24	90.4
CDY66660	Canola	plastid	78.97	88.05
AT3G27550.2	Thale cress	mitochondrion	87.7	80.8
PGSC0003DMT400015748	Potato	nucleus, plastid	59.33	56.1
CDY03983	Canola	cytosol	78.97	54.37
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	61.11	53.75
Os05t0145300-01	Rice	mitochondrion	57.94	52.14
GSMUA_Achr9P19780_001	Banana	nucleus	57.74	51.41
KRG93197	Soybean	mitochondrion	65.08	50.23
KRH56532	Soybean	mitochondrion	64.88	50.08
HORVU1Hr1G019580.2	Barley	plastid	55.56	48.95
TraesCS1B01G108100.1	Wheat	mitochondrion	56.75	46.89
TraesCS1A01G108800.1	Wheat	mitochondrion	56.75	46.89
TraesCS1D01G090300.1	Wheat	mitochondrion	56.35	46.63
Zm00001d010884_P001	Maize	mitochondrion	56.75	44.34
Zm00001d024823_P001	Maize	mitochondrion	57.14	44.04
EES17695	Sorghum	plastid	58.73	43.21
CDX92233	Canola	cytosol	6.35	32.32
CDY34540	Canola	mitochondrion	19.84	30.86
CDY49592	Canola	mitochondrion	19.84	30.77
VIT_14s0066g00360.t01	Wine grape	nucleus	63.1	29.8
CDX83289	Canola	mitochondrion	20.24	27.42
CDY31205	Canola	mitochondrion	20.04	27.15
CDY00840	Canola	plastid	22.62	25.79
CDY27892	Canola	plastid	22.22	25.69
CDY15751	Canola	mitochondrion, plastid, vacuole	14.68	21.33
CDY70711	Canola	nucleus	7.34	14.4
CDX95528	Canola	cytosol	13.49	14.38
CDY30199	Canola	cytosol	14.48	11.39
CDY10350	Canola	plastid	17.86	10.38
CDX75965	Canola	plastid	17.06	10.24
CDY10696	Canola	plastid	17.26	10.16
CDY51940	Canola	plastid	16.87	10.13
CDY18518	Canola	plastid	15.48	9.68
CDY46704	Canola	plastid	14.29	9.2
CDY16286	Canola	plastid	15.08	8.83
CDY49049	Canola	plastid	17.06	8.81
CDY37526	Canola	plastid	16.87	8.66
CDY29740	Canola	plastid	14.88	8.54
CDY38130	Canola	golgi	13.29	6.07
CDX85512	Canola	golgi	12.7	5.84
CDX95529	Canola	plastid	1.39	2.31

Protein Annotations

EnsemblPlants:CDX83707	EnsemblPlantsGene:GSBRNA2T00139413001	GO:A0A078D3L2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	ProteinID:CDX83707	ProteinID:CDX83707.1
SEG:seg	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EE625A	MapMan:35.1	:

Description

BnaC07g24470D

Coordinates

chrLK031833:-:1729470..1731864

Molecular Weight (calculated)

58398.3 Da

IEP (calculated)

9.177

GRAVY (calculated)

-1.124

Length

504 amino acids

Sequence
(BLAST)

001: MLTTRSLSLS RTCKWSLSSL LQSDSSRNLV LSSNPVTSNV MLQPGSSNEF NSSSLMHQVF KGWSRAMSTS RGRSMRSKVE SRMRKESGKT LREIRRAKKL
101: KKKLMTDEER LIYNLKRAKK KVALLLQKLK KYDLPELPSP VHDPELFTPE QTQAFKKIGF KNKNYVPVGV RGVFGGVVQN MHMHWKFHET VQVCCDNFPK
201: EKIKEMATMI ARLSGGVVIN IHNVKTIIMF RGRNYRQPKN LIPVNTLTKR KALFKARFEQ ALESQKLNIK KTEQQLRRMG VNPEDPVAMA SIQRVASTFF
301: NAIDKKEGNS DQEELDRFIA EIEEAADKEW EEEEAAEQEE SGRIRYWNRE EFAGRSRGPE MRSYGDSSHG FRRSERDTRS QRRSNDGDDD DDDNDTDQLD
401: SEDDDEIPKR FDRPRSNTRR QGQGQDFMRR SHDPRPRVRS DEDVLSDLDN TMWDSGDEED APANYISSSD EEDEDENKTK QPRFSNNNSK TKSGKQRDED
501: WDSD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.