Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 3
- extracellular 1
- plasma membrane 1
- endoplasmic reticulum 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85512 | Canola | golgi | 94.2 | 94.8 |
| AT5G16180.1 | Thale cress | endoplasmic reticulum | 51.13 | 78.33 |
| KRH01727 | Soybean | plastid | 34.18 | 50.47 |
| VIT_14s0006g02670.t01 | Wine grape | mitochondrion | 8.61 | 50.26 |
| KRH70401 | Soybean | plastid | 23.48 | 44.12 |
| PGSC0003DMT400067878 | Potato | plastid | 31.91 | 43.89 |
| Solyc02g086200.1.1 | Tomato | plastid | 31.82 | 43.77 |
| CDX92233 | Canola | cytosol | 3.72 | 41.41 |
| HORVU1Hr1G001270.1 | Barley | cytosol, nucleus | 4.53 | 40.98 |
| TraesCS7A01G557100.1 | Wheat | cytosol, plastid | 26.47 | 40.61 |
| EES13710 | Sorghum | plastid | 26.11 | 39.56 |
| TraesCS7D01G553500.1 | Wheat | plastid | 26.11 | 39.51 |
| TraesCS7B01G481800.1 | Wheat | cytosol, plastid | 26.02 | 39.37 |
| GSMUA_Achr9P19190_001 | Banana | plastid | 27.92 | 39.24 |
| CDX95528 | Canola | cytosol | 16.68 | 38.9 |
| Os08t0360100-01 | Rice | plastid | 25.29 | 38.48 |
| Zm00001d032373_P004 | Maize | plastid | 26.29 | 37.32 |
| CDY30199 | Canola | cytosol | 18.4 | 31.67 |
| CDY18518 | Canola | plastid | 22.39 | 30.65 |
| CDX75965 | Canola | plastid | 22.39 | 29.4 |
| CDY51940 | Canola | plastid | 22.3 | 29.32 |
| CDY46704 | Canola | plastid | 19.58 | 27.59 |
| CDY70711 | Canola | nucleus | 6.26 | 26.85 |
| CDY10350 | Canola | plastid | 20.67 | 26.3 |
| CDY10696 | Canola | plastid | 20.4 | 26.29 |
| CDY16286 | Canola | plastid | 19.4 | 24.85 |
| CDY29740 | Canola | plastid | 19.4 | 24.37 |
| CDY37526 | Canola | plastid | 19.95 | 22.43 |
| CDY49049 | Canola | plastid | 19.76 | 22.34 |
| CDY49592 | Canola | mitochondrion | 6.53 | 22.15 |
| CDY34540 | Canola | mitochondrion | 6.44 | 21.91 |
| CDX95529 | Canola | plastid | 5.17 | 18.81 |
| CDY31205 | Canola | mitochondrion | 6.07 | 18.01 |
| CDX83289 | Canola | mitochondrion | 5.98 | 17.74 |
| CDY27892 | Canola | plastid | 6.07 | 15.37 |
| CDY15751 | Canola | mitochondrion, plastid, vacuole | 4.71 | 14.99 |
| CDY66660 | Canola | plastid | 5.98 | 14.6 |
| CDY00840 | Canola | plastid | 5.8 | 14.48 |
| CDY13722 | Canola | mitochondrion, nucleus, plastid | 6.07 | 13.4 |
| CDX83707 | Canola | mitochondrion, nucleus, plastid | 6.07 | 13.29 |
| CDY03983 | Canola | cytosol | 7.25 | 10.93 |
Protein Annotations
| MapMan:16.12.2.1.1.8 | Gene3D:3.30.110.60 | GO:A0A078HI46 | UniProt:A0A078HI46 | EnsemblPlants:CDY38130 | ProteinID:CDY38130 |
| ProteinID:CDY38130.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 |
| EnsemblPlantsGene:GSBRNA2T00065413001 | InterPro:Glyco_trans_14 | InterPro:IPR001890 | InterPro:IPR035920 | PFAM:PF01985 | PFAM:PF02485 |
| PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF10 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF75471 |
| TMHMM:TMhelix | UniParc:UPI0004EF0968 | InterPro:YhbY_like_sf | SEG:seg | : | : |
Description
BnaC02g06430DBnaC02g06430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI46]
Coordinates
chrLK032416:-:272922..278839
Molecular Weight (calculated)
127609.0 Da
IEP (calculated)
9.313
GRAVY (calculated)
-0.475
Length
1103 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGIIDQKIKK GEEHLMISKP LRLILFQSGR HVLRSLFFVT GFLIGVFLYL QLKAFHMSTP KTEQPLWSTV LFHHSTKMEI KHELQTQVLQ HEMNDQELFT
0101: KVSSLSSPSS SPSSSSWFGR NNNDEKMVVK VAFMFMTGGA LPLATLWDKF FEGHEGFYSI YVHTNPSFQE SYPETSVFYS RRIPSQPVYW GTSSMVDAEK
0201: RLLANALLDQ SNQRFVLLSD SCIPLFDFTT IYDYLTGTNL SFIGSFDDPR KSGRGRYNPK MYPQINVTHW RKGSQWFSTT RELALHIIAD TKYYKIFDQH
0301: CKPPCYMDEH YIPTLVHMFH GEMSANRTLT WVDWSRVGPH PGRFIWPDIT DEFLNRIRFT EECAYYGRDG ENTTTSKCFL FARKFTEDTL EPLLRIYPLV
0401: LGSEHSKLQT LLMLTPLFVS ARPLPSLTTI SSLNPNQNPP HSAKAPNFNQ FKENPKLPDA AIKVPTAPWM KGPLFLPPDE LINTSHHHKS TRKQNAEEKT
0501: FKALNRRESG VRGSKAMKKI VRSVEKLEDS EETRVDYGGE FESLGGVVEE DEKRRRRMPW EREEEKFILR RRKKERVLTT ADLILDEGLL KRLRLEGSKM
0601: REWVNVRKAG VTETVVKDIR LIWEGNELAM VRFDVPLCRN MERAQEILEL KTGGLVVLSK KEFLVVYRGP PTSDSSVCVK EGGDEISSSL YVREGERLLN
0701: GLGPRYMDWW MRRPFPVDAD LLPEVVDGYR TPSRRCPPNT RAKLSDEELT YLRNVAQALP FHFVLGRNHG LQGLASAILK LWERCVIAKI AIKWGALNTN
0801: NEEMADELKA RVLILRNKYL IILFRGKDFL SDEVADLVDD RERLLRRYQH FEETKRESDI EISEVVTDGE ELEETSKTGT LLEFQELQRK FGEMEVRNLE
0901: TEAEKAKLDK ELKSQEHKLF ILKSKIEKTA TELLRLNSLR KPSERDDDIE ILTDEERECL RKIGLKMNSS LVLGRRGVFD GVMEGLHQHW KHREVAKVIT
1001: MQKLFSRVVY TAKSLEAESN GVLISIEKLK EGHAILMYRG RNYKRPSSKL MAQNLLTKRK ALQRSVLMQR LGSLKFFAYQ RERTIEDLKL SLVKLQGSAS
1101: ELC
0101: KVSSLSSPSS SPSSSSWFGR NNNDEKMVVK VAFMFMTGGA LPLATLWDKF FEGHEGFYSI YVHTNPSFQE SYPETSVFYS RRIPSQPVYW GTSSMVDAEK
0201: RLLANALLDQ SNQRFVLLSD SCIPLFDFTT IYDYLTGTNL SFIGSFDDPR KSGRGRYNPK MYPQINVTHW RKGSQWFSTT RELALHIIAD TKYYKIFDQH
0301: CKPPCYMDEH YIPTLVHMFH GEMSANRTLT WVDWSRVGPH PGRFIWPDIT DEFLNRIRFT EECAYYGRDG ENTTTSKCFL FARKFTEDTL EPLLRIYPLV
0401: LGSEHSKLQT LLMLTPLFVS ARPLPSLTTI SSLNPNQNPP HSAKAPNFNQ FKENPKLPDA AIKVPTAPWM KGPLFLPPDE LINTSHHHKS TRKQNAEEKT
0501: FKALNRRESG VRGSKAMKKI VRSVEKLEDS EETRVDYGGE FESLGGVVEE DEKRRRRMPW EREEEKFILR RRKKERVLTT ADLILDEGLL KRLRLEGSKM
0601: REWVNVRKAG VTETVVKDIR LIWEGNELAM VRFDVPLCRN MERAQEILEL KTGGLVVLSK KEFLVVYRGP PTSDSSVCVK EGGDEISSSL YVREGERLLN
0701: GLGPRYMDWW MRRPFPVDAD LLPEVVDGYR TPSRRCPPNT RAKLSDEELT YLRNVAQALP FHFVLGRNHG LQGLASAILK LWERCVIAKI AIKWGALNTN
0801: NEEMADELKA RVLILRNKYL IILFRGKDFL SDEVADLVDD RERLLRRYQH FEETKRESDI EISEVVTDGE ELEETSKTGT LLEFQELQRK FGEMEVRNLE
0901: TEAEKAKLDK ELKSQEHKLF ILKSKIEKTA TELLRLNSLR KPSERDDDIE ILTDEERECL RKIGLKMNSS LVLGRRGVFD GVMEGLHQHW KHREVAKVIT
1001: MQKLFSRVVY TAKSLEAESN GVLISIEKLK EGHAILMYRG RNYKRPSSKL MAQNLLTKRK ALQRSVLMQR LGSLKFFAYQ RERTIEDLKL SLVKLQGSAS
1101: ELC
001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF
Arabidopsis Description
CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.