Factsheet for Os08t0360100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13710	Sorghum	plastid	69.38	69.09
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	11.45	68.03
TraesCS7B01G481800.1	Wheat	cytosol, plastid	68.14	67.76
TraesCS7D01G553500.1	Wheat	plastid	67.59	67.22
TraesCS7A01G557100.1	Wheat	cytosol, plastid	66.07	66.62
Zm00001d032373_P004	Maize	plastid	69.1	64.48
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	26.62	48.13
GSMUA_Achr9P19190_001	Banana	plastid	48.69	44.97
VIT_14s0006g02670.t01	Wine grape	mitochondrion	11.03	42.33
AT5G16180.1	Thale cress	endoplasmic reticulum	40.41	40.69
KRH01727	Soybean	plastid	41.79	40.56
PGSC0003DMT400067878	Potato	plastid	43.31	39.15
Solyc02g086200.1.1	Tomato	plastid	43.03	38.9
KRH70401	Soybean	plastid	29.38	36.29
Os05t0551900-00	Rice	plastid	33.79	31.33
Os04t0464800-00	Rice	plastid	31.59	26.72
CDX85512	Canola	golgi	39.45	26.09
Bra023555.1-P	Field mustard	golgi	39.17	25.82
Os11t0592400-00	Rice	plastid	31.31	25.62
CDY38130	Canola	golgi	38.48	25.29
Os06t0304500-01	Rice	mitochondrion	10.9	22.7
Os09t0363100-01	Rice	plastid	29.24	22.39
Os01t0958400-02	Rice	mitochondrion	9.93	17.27
Os04t0492900-03	Rice	mitochondrion	10.21	15.45
Os05t0145300-01	Rice	mitochondrion	9.1	11.79

Protein Annotations

MapMan:16.12.2.1.1.8	Gene3D:3.30.110.60	EMBL:AK066365	ProteinID:BAD03815.1	ProteinID:BAF23549.1	ProteinID:BAT05104.1
ncoils:Coil	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001890
InterPro:IPR035920	EnsemblPlantsGene:Os08g0360100	EnsemblPlants:Os08t0360100-01	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF10	UniProt:Q6YYA3	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00002261BF
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

RNA-binding, CRM domain domain containing protein. (Os08t0360100-01)

Coordinates

chr8:-:16582651..16586421

Molecular Weight (calculated)

82866.1 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.791

Length

725 amino acids

Sequence
(BLAST)

001: MAPPPLHLFS PHVPSTSVSP PDPATEAPPA PKQHRGPRPA PRNPGSAKPL TAGVPGGRTR RAVLGIIRKV RSLELSDPRT PSPNGGGGSS SSSTATARVP
101: FHLPIHPPPP EREEEEEKKG IRRAVPWAAA RDEETKVVLR REKKTRVPTR AETELEAGEL ERLRRAARGK ERWARAKKAG ITDEVVEEVR GQWAKGQELA
201: GVRIVEPLRR CMDRAREILE IKTGGLVVWT RGGIHFVYRG SSYLENAKRH RDFVNYNEEL SPVTSNNPTS QGKYWSKDET LTNDNDEADD KDDKPIKGTL
301: YEREVNRLLD SLGPRFIDWW WNTPLPVDAD LLPEVVPDFK TPFRQCPPGV RPALADEELT YLRKHARPLP THFVLGRNTK LQGLAAAILK LWEKSLIAKV
401: AVKVGIQNTN HEQMARNLKR LTGGTVILRN KDYIIIYRGK DFLPGGVAES VIERESQVHD QQAKEEEARL KMADSLQMIV GLSSERSYVG TFREYQDFHD
501: SHARRTTENN FRIQLEAKKH RLEKELKDQE WRLSMLTKKI ERSNQVLAKL HSSWSPSKKD GDRELLTEEE RRIFRKIGLK MDEHVLLGRR GVFEGVIEEI
601: HQHWKHKEVV KVITKQNQAS QITYTSMMLE VETGGTLIAI ERFTTSHAII LYRGKNYRRP TKSAPSNLLT KREALQRSIE VQRRGSMKYF AQERKKSIDE
701: LKRELRNVTW EIRKLNHDTE QSWTA

Best Arabidopsis Sequence Match ( AT5G16180.1 )
(BLAST)

001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF

Arabidopsis Description

CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.