Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G376400.1 | Wheat | plastid | 73.66 | 80.67 |
| KXG22496 | Sorghum | plastid | 82.48 | 80.52 |
| HORVU1Hr1G083550.4 | Barley | plasma membrane | 79.67 | 80.39 |
| Zm00001d038922_P001 | Maize | extracellular | 81.33 | 80.0 |
| TraesCS1B01G396800.2 | Wheat | plastid | 80.69 | 79.67 |
| TraesCS1D01G383500.1 | Wheat | mitochondrion, plastid | 79.03 | 79.33 |
| CDX95528 | Canola | cytosol | 37.98 | 62.79 |
| GSMUA_Achr3P26360_001 | Banana | plastid | 61.38 | 62.5 |
| CDX92233 | Canola | cytosol | 7.29 | 57.58 |
| VIT_17s0000g03610.t01 | Wine grape | plastid | 60.87 | 57.35 |
| Solyc03g119450.2.1 | Tomato | nucleus | 58.7 | 55.98 |
| KRH48490 | Soybean | nucleus | 56.27 | 55.63 |
| KRH39182 | Soybean | plastid | 56.14 | 55.5 |
| PGSC0003DMT400014644 | Potato | plastid | 58.44 | 55.46 |
| CDY18518 | Canola | plastid | 57.03 | 55.34 |
| KRH41639 | Soybean | mitochondrion, plastid | 51.15 | 55.02 |
| CDX75965 | Canola | plastid | 58.82 | 54.76 |
| CDY51940 | Canola | plastid | 58.57 | 54.59 |
| Bra001704.1-P | Field mustard | plastid | 58.57 | 54.52 |
| Bra037586.1-P | Field mustard | plastid | 56.52 | 54.1 |
| AT3G18390.1 | Thale cress | plastid | 57.8 | 53.3 |
| Bra022317.1-P | Field mustard | cytosol, endoplasmic reticulum | 8.95 | 46.05 |
| CDX95529 | Canola | plastid | 16.62 | 42.9 |
| Os08t0360100-01 | Rice | plastid | 31.33 | 33.79 |
| Os11t0592400-00 | Rice | plastid | 36.06 | 31.83 |
| Os04t0464800-00 | Rice | plastid | 32.86 | 29.99 |
| Os09t0363100-01 | Rice | plastid | 34.78 | 28.72 |
| Os06t0304500-01 | Rice | mitochondrion | 11.38 | 25.57 |
| Os01t0958400-02 | Rice | mitochondrion | 10.74 | 20.14 |
| Os04t0492900-03 | Rice | mitochondrion | 11.76 | 19.21 |
| Os05t0145300-01 | Rice | mitochondrion | 10.49 | 14.64 |
Protein Annotations
| Gene3D:3.30.110.60 | MapMan:35.1 | UniProt:A0A0P0WQC0 | ProteinID:BAS95221.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009719 | GO:GO:0009737 |
| InterPro:IPR001890 | InterPro:IPR035920 | EnsemblPlantsGene:Os05g0551900 | EnsemblPlants:Os05t0551900-00 | PFAM:PF01985 | PFscan:PS51295 |
| PANTHER:PTHR31846 | PANTHER:PTHR31846:SF4 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF75471 | UniParc:UPI000393BB93 |
| InterPro:YhbY_like_sf | SEG:seg | : | : | : | : |
Description
Similar to EMB1865 (embryo defective 1865); RNA binding. (Os05t0551900-00)
Coordinates
chr5:-:27441786..27445901
Molecular Weight (calculated)
87898.9 Da
IEP (calculated)
8.564
GRAVY (calculated)
-0.553
Length
782 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSELPLHH SFRLSSRPHL RLLPLRLLSS RHASSSSSTT AAASSSSSSG GNRAPPAPNP TRGAPWLQKW GPTDPAAPPP PPPAPSPTSS IDRIVHRLRN
101: LGLASDDDEP TAAAATATAP PDGNERLSDL LDRSWARPDQ QFAASSFDES VLPWERDEVA RGRENEEDGV KRRRVRAPSL AELTIEDEEL RRLRRLGMTL
201: RDRITVPKAG VTQAVTEKIH DAWRKSELVR LKFHEDLAHD MKTAHELVER RTGGLIIWRS GSVMVVYRGS NYKRPLKSET LDGNSSAVKG ADGTLFIPDA
301: SSPTEHDSQG KDVNTQREIA ARLNMQNTED MTEEELEFNQ MLDELGPRFV DWWGTGILPV DADLLPQTIP GYKTPFRLLP TGMRLTLTNA ELTNLRKLAR
401: DLPCHFALGR NRNHQGLAAA IVKLWEKSLV VKIAVKRGIQ NTNNKLMSEE IKNLTGGTLL LRNKYYIVIY RGKDFLPTSV AAALAEREEL TKDIQNVEEQ
501: KRCIPVVHSM DDSLDGHALA GTLAEFQEAQ ARWGREVTAK EQEEMKEASS RSVKEKLFKR LEHKLSIAQA KIHRAERLLS KIEASMVLAN PSDDKEMITD
601: EERSVFRRIG LRLKAYLPVG IRGVFDGVIE NMHLHWKHRE VVKLITKQKT LPFVEETARL LEYESGGILV AIERVTKGYA LIFYRGKNYR RPINIRPRNL
701: LTKAKALKRA VAMQRHEALS QHIAELENNI RQMKLDLGIE VDEEYEEDGS DSENENNEAV SSARYDEVSN LLKLMLSVLE PP
101: LGLASDDDEP TAAAATATAP PDGNERLSDL LDRSWARPDQ QFAASSFDES VLPWERDEVA RGRENEEDGV KRRRVRAPSL AELTIEDEEL RRLRRLGMTL
201: RDRITVPKAG VTQAVTEKIH DAWRKSELVR LKFHEDLAHD MKTAHELVER RTGGLIIWRS GSVMVVYRGS NYKRPLKSET LDGNSSAVKG ADGTLFIPDA
301: SSPTEHDSQG KDVNTQREIA ARLNMQNTED MTEEELEFNQ MLDELGPRFV DWWGTGILPV DADLLPQTIP GYKTPFRLLP TGMRLTLTNA ELTNLRKLAR
401: DLPCHFALGR NRNHQGLAAA IVKLWEKSLV VKIAVKRGIQ NTNNKLMSEE IKNLTGGTLL LRNKYYIVIY RGKDFLPTSV AAALAEREEL TKDIQNVEEQ
501: KRCIPVVHSM DDSLDGHALA GTLAEFQEAQ ARWGREVTAK EQEEMKEASS RSVKEKLFKR LEHKLSIAQA KIHRAERLLS KIEASMVLAN PSDDKEMITD
601: EERSVFRRIG LRLKAYLPVG IRGVFDGVIE NMHLHWKHRE VVKLITKQKT LPFVEETARL LEYESGGILV AIERVTKGYA LIFYRGKNYR RPINIRPRNL
701: LTKAKALKRA VAMQRHEALS QHIAELENNI RQMKLDLGIE VDEEYEEDGS DSENENNEAV SSARYDEVSN LLKLMLSVLE PP
001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR
Arabidopsis Description
EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.